Gene Smal_1144 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmal_1144 
Symbol 
ID6474996 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStenotrophomonas maltophilia R551-3 
KingdomBacteria 
Replicon accessionNC_011071 
Strand
Start bp1302420 
End bp1304480 
Gene Length2061 bp 
Protein Length686 aa 
Translation table11 
GC content68% 
IMG OID642730309 
Productdiguanylate cyclase/phosphodiesterase 
Protein accessionYP_002027532 
Protein GI194364922 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.871944 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTGGCA GTTACAGTCA GAGCCTGGTC ACCATCTCCC TGCTGGTGGC CATTCTTGCT 
TCGTACACGG CGCTGGACAT GGCCGGCCGG CTGGCCACGG CCGAAGGTCG TGTGGCGCGC
TGGTGGCTGG CCGGTGGCGC GGCGGCGATG GGCCTGGGCA TCTGGTCGAT GCACTTCATC
GGCATGCTCG CCTTCGACCT GCCGATCCCG GTCGGCTACG ACCTCGGCAT CACCCTGTAC
TCGCTGGCGG TGTCGATCGG CGCCTCGGCC TACGCCCTAT GGCTGGTGTC GCGCCCCAGC
CTGCCGTGGC GGCGGCTGCT GGCCGGCGCG GTGCTGATGG GCCTGGGCAT CGCCACCATG
CACTACCTGG GCATGGCCGC GATGCGCATG CAGCCGGGTA TCGACTATCA CCCAGGCTGG
TTCGCCGCCT CGATCGCGGT CGCCATCGGT GCCGCCGGCG CCGCGCTATG GATCGCCTTC
CGGCTGCGGG CCGAGCAGCG CAACACGCTG CGCCTGCGCG CCCTGGCCTC GCTGGTGATG
GGCCTGGCCA TCGTCGGCAT GCATTACACC GGCATGGCCG CCGCACGTTT CCCTGAAGGC
AGCATCTGCG GCGCGGTCGG CAGTGGCGGC ATCGACACCC GCTGGCTGGC GGTGCTGGTG
ATCGTCACCA CCGTGGCCAC GCTGGGCATT GCTCTGGTCG CCTCACTGTT CGACCGGCAG
ATGCGCGTGC GCACCGGCCT GCTGGCCGAT TCGCTGGCGC ACGCCAACGA CAAGCTGATC
CAGGCCGCCC TGCATGACCC GTTGACCCAG CTGCCGAACC GCATGCTGCT GCAGGACCGC
ATCGAGCAGG CCATCGAGAA GGCGCGCCGT CGTGGCCGCG CGGTGGCGGT GATGTTCTGC
GACCTGGACG GCTTCAAGGC GGTCAACGAT GCCTACGGCC ACCAATTGGG CGACCGCCTG
CTGGTGGCGG TGGCACAGCG CATCGGCGGC CTGCTGCGGC CGCAGGACAC ATTCGCGCGC
CTCGGCGGCG ACGAGTTCGT GATCGTGCTG GCCATCGACA TCCCGGACGA CGCGGTGGTG
GTAGCCGAAC GCATCATCGC CGCCGCCGGC GAGCCGTTCA CACTGGATGC GGCCGAACTG
CAGGTCAGCG CCAGCCTCGG CATCGCCCTG TACCCGGATG ACGCCAGCAA CGAACGCGAA
CTGATGGCGC ACGCCGATGC GGCGATGTAC CACACCAAGG AAACCGGCCG GAACGGCTAT
ACCTTCTTCA CCCCGTCGAT GCAGCTCAGC GCCAACCGCC AGCTGCGCCT GCTGCAGGAC
CTGCGCAAGG CGATCGCGCG TGACGAGCTG CTGCTGCACT ACCAGCCGAA GTTCCCGGCC
GCTGGCGCAC CGGCTACCGG CGCCGAGGCG CTGCTGCGCT GGCAGCACCC GGAACTGGGC
CTGCTGGCGC CGGATGTGTT CATTCCCATC GCCGAGCGCA GCGGCCTGAT CCTGCCGATC
GGCGACTGGG TACTGGACCG CGCCTGTGCG CAGCTGCGGG CATGGCACGA GGCCGGGCAT
ACGGAATGGT CGATGGCGGT GAACCTGTCG CCGCTGCAGT TCGCCTCACC GGCGCTGCTG
GACAGCGTGC GCGAGGTGCT GCAACGGCAC CGGATCGAAC CGGCGCGACT GACCCTGGAA
ATCACCGAGA CCACGGCGAT GAAGGATGTC GACGCCAGCC TGGCGATCCT CAACGACCTG
ACCGCGATGG GCGTGCATAT CGCCATCGAC GATTTCGGCA CCGGCTACTC CAGCCTGCTG
TACCTGAAGC GGATGCCGGC TACCGAACTC AAGATCGACC GCGCATTCGT GCATGACCTG
GAACGCAACG ACGAAGACGC CGCCATCGTG TCGTCGATCA TCGCGCTGGG CCGCACCCTG
CAGCTGCAGG TGGTGGCCGA AGGCGTGGAG ACGCAGGCAC AGCGTGAGTA CCTGAGCGAA
CTGGGCTGTG ACCAGTTGCA GGGTTATCAC CTTGGCCGGC CTATGGATGC CGAAGAGTTC
CTGCGCCGGG TGGCGGGGTA G
 
Protein sequence
MTGSYSQSLV TISLLVAILA SYTALDMAGR LATAEGRVAR WWLAGGAAAM GLGIWSMHFI 
GMLAFDLPIP VGYDLGITLY SLAVSIGASA YALWLVSRPS LPWRRLLAGA VLMGLGIATM
HYLGMAAMRM QPGIDYHPGW FAASIAVAIG AAGAALWIAF RLRAEQRNTL RLRALASLVM
GLAIVGMHYT GMAAARFPEG SICGAVGSGG IDTRWLAVLV IVTTVATLGI ALVASLFDRQ
MRVRTGLLAD SLAHANDKLI QAALHDPLTQ LPNRMLLQDR IEQAIEKARR RGRAVAVMFC
DLDGFKAVND AYGHQLGDRL LVAVAQRIGG LLRPQDTFAR LGGDEFVIVL AIDIPDDAVV
VAERIIAAAG EPFTLDAAEL QVSASLGIAL YPDDASNERE LMAHADAAMY HTKETGRNGY
TFFTPSMQLS ANRQLRLLQD LRKAIARDEL LLHYQPKFPA AGAPATGAEA LLRWQHPELG
LLAPDVFIPI AERSGLILPI GDWVLDRACA QLRAWHEAGH TEWSMAVNLS PLQFASPALL
DSVREVLQRH RIEPARLTLE ITETTAMKDV DASLAILNDL TAMGVHIAID DFGTGYSSLL
YLKRMPATEL KIDRAFVHDL ERNDEDAAIV SSIIALGRTL QLQVVAEGVE TQAQREYLSE
LGCDQLQGYH LGRPMDAEEF LRRVAG