| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_1056 |
|---|
| Symbol | |
|---|
| ID | 6478483 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stenotrophomonas maltophilia R551-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011071 |
|---|
| Strand | + |
|---|
| Start bp | 1208788 |
|---|
| End bp | 1210530 |
|---|
| Gene Length | 1743 bp |
|---|
| Protein Length | 580 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 642730220 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_002027444 |
|---|
| Protein GI | 194364834 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.77678 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.689214 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCGGCA AGGCATCGCC CATCGGGTTG CGGACCTGGG TCTGGATCCT GGCGGGGTTG
TTCGTGGTCT GTACGCTGCC GTTGATGGCC ATCGCGCTGG TCCAGGGCAC GCTGCGCTAC
AGCGCCGCCG AAGACAACCT GGTCAGCCTG CGCCAGCTGC GGCAGACCTT CGACCTGGCC
AACCTGGTCT CCGCCGAACG CGGCCCGGCC AACAGCCTGC TCGGCGCCGA CCCGGCCGAT
GCCGCCGAAC ACGCGCGGCT GGCTGCGCAG CTGGCGATGG CGCGCAGGCG GGTGGATATC
TCGATGCAGC AGCTGGACAG CGTGTTCAGG GCCGCTCCCG GTGTGGTGGA CGAGCAGGGC
CTGCTGGCCG ATGCGCAGCG TCGGCTGAAA TCGGCGCGTG CGGCGGTCGA CCGCGTCACC
GCGCAGCCGC AGGAGGCGCG CCGGGTGGAG GAAGTGGAGC GGGCGATCAA CAGCATGTTC
GCAGTCGTCG ACCGGCTGCA TCTGCTGACC TCGGCGCAGA TCAATCTGCT GGTCAGCGTC
GACCGTGAGG CAGCCATTCC GGCGATGCAG GGCCAGGTGC TGATCGATCT GCGCGAGCAT
GGCGGCCGCC TGGCGTCCAA CGTGATGGCG CCGGTCGCGG TGCCGGGCGC CTGGCGCGAC
GAGCAGGTAC GCGCTGCACT GCAGACCGAG GGCCGCCTGC TGGAACTGTG GCGGCTGGCC
GGCAGCCACC AGTCGGTGTT CCGCAGTGAC CCGGAGCTGT CCTGGCACTG GGACATGGCC
CGTCGGCAGT TCTTTGGCGA GTCGCTGCCG ATGATCGAGC AGCTGATCGA GGACGGTCGC
CGCGGCGTGC CGCCACCATG GACCGCGGCC GAGTTCACCG CGCGCTACGT GCCGACGCTG
CAGTCACTGG AAGCGCTGCG TGATGGCTAC CTGAGCGTGT CCATCGCCCG TTTCGAGCGC
ACCCGCAACC GTGAGGCGAC ACGGCTGGCA GTGTTGGTGG CGACTGCGCT GGGCACGCTG
GTGGTGCTTG GCGTGGCCCT GCGCATTGCC CATCTGCAGA TCCTGCGGCC GTTGCTGCTG
GCGCAGCGGC AGGTGATCCA GATCGCCTCC GATGCACCCG GCCCGGAGCA GCACGTCACC
CATCCGCTGG CGGAAATGCA GCGCCTGTTC GATGCCATCG AAGTGCTGCG CGAGAAGTCG
CGGGAACGCT TGGCGTTGAC CAGCGAGCTG CGCCAGCTGG CCGGTACCGA CGAACTGACC
GGCCTGCTGA ACCGACGCGC GCTGGAGGAA GTGGTGCAGC AGCGGCATGC CGAGGGCGAG
GCCAGTGCGG TGGTGATCCT GCTGGACGTC GACCGCTTCA AGGCGATCAA CGATGGCCAT
GGCCACGATG CCGGTGACCA GGTGCTGGAG CAGGTGGCAC AGCTGCTGCA GCGCCACCTG
CGCCGCAGTG ACAGCATTGC CCGCTACGGT GGCGAGGAAT TCCTGGTGCT GTTGGCCGAC
GGTGATCTCG CGGGTGGCCG CCGCCTGGCG GAGTCGCTGC GCCTGGCGCT GCAGCAGTTG
GACATCGTAA TCGCGGGTGG CATCGAACTG CGGGTGACCG CCAGTTTCGG CGTGGCCCAG
GGAGGTACCG ATGCACTGGG CTGGCGCACG CTGCTGCGTG CCGCCGATGC CGCCATGTAC
CAGGCCAAGG CGCAGGGCCG TGATCGCGTG CGGGTGGCCG GTGGCGGGCG CGTTCCGCGC
TGA
|
|---|
| Protein sequence | MAGKASPIGL RTWVWILAGL FVVCTLPLMA IALVQGTLRY SAAEDNLVSL RQLRQTFDLA
NLVSAERGPA NSLLGADPAD AAEHARLAAQ LAMARRRVDI SMQQLDSVFR AAPGVVDEQG
LLADAQRRLK SARAAVDRVT AQPQEARRVE EVERAINSMF AVVDRLHLLT SAQINLLVSV
DREAAIPAMQ GQVLIDLREH GGRLASNVMA PVAVPGAWRD EQVRAALQTE GRLLELWRLA
GSHQSVFRSD PELSWHWDMA RRQFFGESLP MIEQLIEDGR RGVPPPWTAA EFTARYVPTL
QSLEALRDGY LSVSIARFER TRNREATRLA VLVATALGTL VVLGVALRIA HLQILRPLLL
AQRQVIQIAS DAPGPEQHVT HPLAEMQRLF DAIEVLREKS RERLALTSEL RQLAGTDELT
GLLNRRALEE VVQQRHAEGE ASAVVILLDV DRFKAINDGH GHDAGDQVLE QVAQLLQRHL
RRSDSIARYG GEEFLVLLAD GDLAGGRRLA ESLRLALQQL DIVIAGGIEL RVTASFGVAQ
GGTDALGWRT LLRAADAAMY QAKAQGRDRV RVAGGGRVPR
|
|---|
| |