| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_1013 |
|---|
| Symbol | murD |
|---|
| ID | 6478368 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stenotrophomonas maltophilia R551-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011071 |
|---|
| Strand | + |
|---|
| Start bp | 1152210 |
|---|
| End bp | 1153619 |
|---|
| Gene Length | 1410 bp |
|---|
| Protein Length | 469 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642730177 |
|---|
| Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
|---|
| Protein accession | YP_002027401 |
|---|
| Protein GI | 194364791 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
|---|
| TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.016475 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAGATTT CGAAGTTTGA AGGAAAGCGT GTTGCGCTGT GGGGCTGGGG CCGTGAGGGC
CGTGCCGCGT TTGCGGTGCT GCATTCGCGC CTGCCCACGC TTGGCCTGAG CCTGTTCTGT
CCAGCTGCCG AAGTCGAGGC AGCGCGTGCG GAAACACACG GTGCGCTGGA CGTCCGTGGT
GAGCCGTCGG CCGAGACGCT GGCTGCCTTC GATGTGGTGA TCAAGTCGCC GGGCATCAGC
CCTTACCAGC CAATCGCGCT GGCCGCCGCC GCGCAGGGCA CCACCTTCAT CGGTGGCACT
GCGCTGTGGT TTGCCGAACA TGCGAGTGCC GATGGCATCG TGCACGACAC CGTGTGCGTG
ACCGGCACCA AGGGCAAGAG CACCACCACC GCGCTGGTCG CACACCTGCT GCGTGCGGCC
GGCCACCGTA CGGGCCTGGT CGGCAACATC GGCCTGCCGC TGCTGGAAGT GCTGGACCCG
CAGCCCGCGC CCGAGTACTG GGCGGTGGAA CTGTCCAGCT ACCAGACCGG CGAAGTGGCG
CGCAGTGGCG CCCGCCCGCA GGTGGCGGTG GTGCTGAACC TGTTCCCGGA ACACCTGGAC
TGGCATGGCA GCGAACAGCG TTACATCGAG GACAAGCTGC AGCTGGTGAC TGAAGCCGCA
CCGCGCATCG CCGTGCTCAA CGCCGCCGAT CCGCATCTGG CCGCGCTGTC GCTGCCTGAT
AGCAAGGTGA TCTGGTTCAA CCAGCCGCAG GGCTGGCATA TGCGCGGTGA CATCGTGCAT
CGCGGTGAGC AGGCCGTGTT CGACACCCGC AACACACCGC TGCCGGGCCG CCACAACCGC
GGCAACCTGT GCGCGGTACT GGCCGCGCTG GAAGCACTGG GCCTGGATGC GGTGGCGCTG
GCACCGGCGG TGCAGGATTT CCGCCCGCTG CCGAACCGCC TGCAGCGCAT CGGCGCGGCC
GAAGGCCTGA CCTACGTCAA CGATTCGATC AGCACCACGC CGCATGCCAG CCTGGCCGCG
CTGGAGTGTT TCGCCGGGCA GCGCATCGCG CTGCTGGTGG GCGGGCACGA CCGTGGCTTG
GACTGGACCG ATTTCATGCA GCACATGGCG CACGACGTGC CGCCGGTGGA GATCGTGACC
ATGGGCAGCA ATGGCCCGCG CATCCACGCG ATGCTGCAGC CGCTGGCCGA TGCCGGTCGC
TTCGGCCTGC ACGCTGCGGG CGATCTGCCG GAGGCGATGG CCTTGGCGCG TGCGGCGCTG
GGTTCTGAGG GCGGGGTGAT ATTGCTGTCG CCTGGCGCAC CGAGTTTCGG TGCGTACCGT
GACTACGTGG CGCGTGGCCG CCACTTCGCC GAGCTGGCCG GCTTCGATCC GGACAGCATC
AGCGCGATTC CGGGTCTGGG CATCGCCTGA
|
|---|
| Protein sequence | MKISKFEGKR VALWGWGREG RAAFAVLHSR LPTLGLSLFC PAAEVEAARA ETHGALDVRG
EPSAETLAAF DVVIKSPGIS PYQPIALAAA AQGTTFIGGT ALWFAEHASA DGIVHDTVCV
TGTKGKSTTT ALVAHLLRAA GHRTGLVGNI GLPLLEVLDP QPAPEYWAVE LSSYQTGEVA
RSGARPQVAV VLNLFPEHLD WHGSEQRYIE DKLQLVTEAA PRIAVLNAAD PHLAALSLPD
SKVIWFNQPQ GWHMRGDIVH RGEQAVFDTR NTPLPGRHNR GNLCAVLAAL EALGLDAVAL
APAVQDFRPL PNRLQRIGAA EGLTYVNDSI STTPHASLAA LECFAGQRIA LLVGGHDRGL
DWTDFMQHMA HDVPPVEIVT MGSNGPRIHA MLQPLADAGR FGLHAAGDLP EAMALARAAL
GSEGGVILLS PGAPSFGAYR DYVARGRHFA ELAGFDPDSI SAIPGLGIA
|
|---|
| |