| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_0828 |
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| Symbol | |
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| ID | 6478013 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Stenotrophomonas maltophilia R551-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011071 |
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| Strand | + |
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| Start bp | 960733 |
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| End bp | 961737 |
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| Gene Length | 1005 bp |
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| Protein Length | 334 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642729978 |
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| Product | isocitrate dehydrogenase |
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| Protein accession | YP_002027216 |
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| Protein GI | 194364606 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
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| TIGRFAM ID | [TIGR00169] 3-isopropylmalate dehydrogenase
[TIGR00175] isocitrate dehydrogenase, NAD-dependent, mitochondrial type
[TIGR00183] isocitrate dehydrogenase, NADP-dependent, prokaryotic type
[TIGR02088] isopropylmalate/isohomocitrate dehydrogenases |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.47191 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACGCAGA AAATTACGGT CATCCGCGGC GACGGCATTG GCCCGGAAAT CATGGACGCT
ACCCTGTTCG TGCTCGACCA GCTCAAGACT GGCCTGGAGT ACGAAGACGC CGACGCCGGC
CTGGTGGCCC TGGAAAAGCA CGGCGACCTG ATGCCGGCGG TGACCCTGGA ATCGATCGCG
CGCAACAAGG TCGCGCTGAA GAGCCCGCTG ACCACCCCGG TCGGTGGTGG CTTCACCTCG
ATCAACGTCA GCCTGCGTCG CCACTTCGAC CTGTACGCCA ATGTGCGTCC GGCCCACACC
TTCCCGAACA CCAAGTCGCG TTTCGACAAC GTCGACCTGA TCACCGTTCG CGAGAACACC
GAAGGCGCCT ACCTGGCCGA AGGCCAGGAA GTGTCGGCCG ACGGCGAGAC CGCCTTCTCC
GGCACCCGCA TCACCCGCAA GGGCTCCGAG CGCATCGTGC GCTACGCCTT CGAGCTGGCC
CGCAGTGTCG GCCGCAAGAA GGTCACCGCG GTGCACAAGG CCAACATCAT CAAGTCGACC
TCGGGCCTGT TCCTGAATGT CGCCCGTGAA GTGGCCGCAC AGTACCCGGA CATCGAGTTC
CAGGAAATGA TCGTCGACAA CTGCTGCATG CAGCTGGTGA TGCGTCCGGA ACAGTTCGAC
GTGATCGTCA CCACCAACTT GTTCGGCGAC ATCATCTCCG ACCTGTGCGC CGGTCTGGTG
GGCGGCCTGG GCCTGGCCCC GGGTGCCAAC ATCGGCAAGG ACGCGGCGAT CTTCGAGGCC
GTGCACGGCA CCGCGCCGGA CATCGCCGGC CAGGGCAAGG CCAATCCGTG CGCGCTGCTG
CTGGCAGCGG CACAGATGCT GGACCATGTC GGCCAGCCGG AAAACGCCGA GCGCCTGCGC
AAGGCCATCG TGGCCACCAT GGAAGCCAAG GATTCGCTGA CCGGCGACCT GGGCGGCAGC
GGCACCACCA TGAGCTTCGC CAAGGCCATC GCTACCCGCC TGTAA
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| Protein sequence | MTQKITVIRG DGIGPEIMDA TLFVLDQLKT GLEYEDADAG LVALEKHGDL MPAVTLESIA
RNKVALKSPL TTPVGGGFTS INVSLRRHFD LYANVRPAHT FPNTKSRFDN VDLITVRENT
EGAYLAEGQE VSADGETAFS GTRITRKGSE RIVRYAFELA RSVGRKKVTA VHKANIIKST
SGLFLNVARE VAAQYPDIEF QEMIVDNCCM QLVMRPEQFD VIVTTNLFGD IISDLCAGLV
GGLGLAPGAN IGKDAAIFEA VHGTAPDIAG QGKANPCALL LAAAQMLDHV GQPENAERLR
KAIVATMEAK DSLTGDLGGS GTTMSFAKAI ATRL
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