Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smal_0749 |
Symbol | rpoB |
ID | 6477852 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Stenotrophomonas maltophilia R551-3 |
Kingdom | Bacteria |
Replicon accession | NC_011071 |
Strand | + |
Start bp | 872779 |
End bp | 876933 |
Gene Length | 4155 bp |
Protein Length | 1384 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642729899 |
Product | DNA-directed RNA polymerase subunit beta |
Protein accession | YP_002027137 |
Protein GI | 194364527 |
COG category | [K] Transcription |
COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.910245 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.541943 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGTCCT ATTCGTTCAC CGAAAAAAAG CGTATCCGCA AGGATTTCGG CAAGCAGCGT TCGATTCTCG AAGTGCCGTT CCTGCTCGCC ATCCAGGTGG ATTCCTACCG TGAATTCCTG CAGGAAAACG TCGATCCGGC CAAGCGCACG GACCACGGCC TGCACGCTGC GCTGAAGTCG GTCTTCCCGA TCGCCAGCTA CAGCGGCAAC GCTGCCCTGG AATACGTCGG CTACAAGCTG GGCGAACCGG TCTTCGACGA GCGTGAGTGC CGCCAGCGTG GCATGAGCTA CGGCGCCCCT CTGCGCGTGA CCGTGCGCCT GGTGATCTAC GACCGTGAGT CGTCGACCAA GGCCATCAAG TACGTGAAGG AGCAGGAGGT CTATCTGGGC GAAATCCCGC TGATGACCGA GAACGGCACC TTCATCGTCA ACGGCACCGA GCGCGTCATC GTCTCGCAGC TGCACCGTTC GCCGGGCGTG TTCTTCGACC ACGACCGTGG CAAGACCCAC AGCTCGGGCA AGCTTCTGTA CAGCGCCCGC ATCATTCCTT ACCGCGGTTC CTGGCTGGAC TTCGAGTTCG ACCCGAAGGA CGCGCTGTTC ACCCGTATCG ACCGTCGCCG CAAGCTGCCG GTGTCGATCC TGCTGCGCGC GCTTGGCTAC AGCAACGAAG AGATGCTGGC CGAGTTCTTC GAGATCAACA CCTTCCACAT CAACCCGGAT GAAGGCGTCC AGCTGGAGCT GGTGCCGGAG CGCCTGCGCG GCGAAACCCT GGGCTTTGAC CTCGCCGACG GCGACAAGGT CATCGTGGAA GCCGGCAAGC GCATCACCGC GCGCCACATC AAGCAGCTGG AAGCCTCGGG CATCGCCGCC CTGGCCGTGC CGGACGACTA CATCGTCGGC CGCATCCTGT CGCACGACGT GGTCGATGCT TCGACCGGCG AACTGCTGGC CCAGGCCAAC GACGAGATCA CCGACGAGCA GCTGCAGGCC TTCCGCAAGG CCGGCGTGGA TGCCGTGGGC ACCCTGTGGG TGAACGACCT GGATCGTGGC CCGTACCTGT CCAACACCCT GCGCATCGAC CCGACCAAGA CCCAGCTGGA AGCCCTGGTC GAGATCTACC GCATGATGCG TCCGGGCGAA CCGCCGACCA AGGACGCCGC GCAGAACCTG TTCCACAACC TGTTCTTCAC CTTCGAGCGC TACGACCTGT CCGCGGTCGG CCGCATGAAG TTCAACCGTC GCGTGGGCCG CAAGGAAACC ACCGGCGAAG CCGTGCTGTA CGACCGCAAG TACTACGGCG AGCGCAACGA CGAAGAGTCC AAGCGCCTGG TTGCCGCCCA TGGCGACAGC TCCGACATCC TGGACGTGAT CAAGGTCCTG ACCGAGATCC GCAACGGTCG TGGCGTGGTC GATGACATCG ATCACCTGGG CAACCGTCGC GTGCGTTCGG TCGGCGAAAT GGCCGAGAAC GTGTTCCGCG TGGGCCTGGT CCGCGTCGAG CGCGCGGTCA AGGAGCGCCT GTCGATGGCC GAGTCCGAAG GCCTGACCCC GCAGGAGCTG ATCAACGCCA AGCCGGTCGC CGCTGCCATC AAGGAGTTCT TCGGCTCCTC GCAGCTGTCG CAGTTCATGG ACCAGAACAA CCCGCTGTCG GAAGTGACCC ACAAGCGTCG CGTCTCGGCC CTGGGCCCGG GCGGTCTGAC CCGTGAGCGC GCCGGCTTCG AAGTGCGCGA CGTGCACCCG ACCCATTACG GCCGCGTCTG CACCATCGAA ACCCCGGAAG GCCCGAACAT CGGCCTGATC AACTCGCTGG CCGTGTACGC CCGCACCAAC CAGTACGGTT TCCTCGAGAC CCCGTACCGC AAGGTCGTGG ACGGCAAGGT CTATGACGAA GTCGAGTTCC TGTCGGCGAT CGAAGAAAAC GAGTACGTCA TTGCGCAGGC CAACGCGCTG ACCAATGCCG ACAGCGTGCT GACCGAACAG TTCGTTCCTT GCCGCTTCCA GGGCGAATCG CTGCTGAAGC CGCCGGCGGA AGTCCACTTC ATGGACGTCT CGCCGATGCA GACCGTGTCG ATCGCGGCCG CGCTGGTTCC GTTCCTGGAG CACGATGACG CCAACCGCGC ACTGATGGGC GCCAACATGC AGCGTCAGGC CGTGCCGACC CTGCGTGCGC AGAAGCCGCT GGTCGGTACC GGCATCGAGC GTGCCGTGGC GCGTGACTCC GGTGTGACCG TGAATGCCCG TCGTGGTGGC GAGATCGTGC AGATCGATGC CGCCCGCATC GTGGTCAAGG TGGTCGAGGA AGAAATCGTC GGTGCCACCG ACGCCGGCGT CGACATCTAC AACCTGGTCA AGTACACCCG TTCGAACCAG AACACCTGCA TCAACCAGCG TCCGCTGGTC CAGGTGGGTG ACATCATCGC CCGCGGCGAC GTGCTGGCCG ACGGTCCGTC CACCGACATC GGCGAACTGG CCCTGGGCCA GAACATGCTG ATCGCGTTCA TGCCGTGGAA CGGCTACAAC TTCGAAGACT CCATCCTGCT TTCCGAGCGC GTGGTGGAAG AGGATCGCTA CACCACGATC CACATCGAAG AGCTGACCTG CGTCGCGCGT GATACCAAGC TGGGGCCGGA GGAAATCTCC GCCGACATCC CGAACGTTTC CGAGCAGGCG CTGAACCGCC TGGACGAAAG CGGCGTGGTG TACATCGGTG CCGAAGTCCG CGCCGGCGAC ATCATGGTCG GCAAGGTCAC CCCGAAGGGC GAAAGCCAGC TGACCCCGGA AGAGAAGCTG CTGCGCGCGA TCTTCGGCGA GAAGGCGTCG GACGTGAAGG ACAGCTCGCT GCGCGTGCCG CCGGGCATGG ACGGCACCGT CATCGATGTG CAGGTCTTCA CCCGCGACGG CATCGAGAAG GACAAGCGCG CCCGTCAGAT CGAAGAGTCT GAAATCAAGC GCGTCAAAAA GGACTTCGAC GACCAGTTCC GCATCCTGGA AGCGGCCATC TACATGCGTC TGCGCTCGCA GATCGTGGGC AAGGTGGTCA ACGGTGGCGC TGGCCTGAAG AAGGGCGACG TCATCAGCGA CGCGTTCCTG GACGGCCTGA AGAAGGCTGA CTGGTTCGCC CTGCGCATGA AGGACGAGGA CGCTTCGGAA GCCATCGAGC GCGCGCAGAA GCAGATCCAG GCGCACGAGA AGGAATTCGA GCGTCGCTTC GCCGACAAGC GCGGCAAGAT CACCGCCGGC GATGACCTCG CCCCGGGCGT GCTGAAGATG GTCAAGGTGT TCCTGGCCGT GAAGCGCCGC ATCCAGCCGG GCGACAAGAT GGCAGGCCGC CACGGCAACA AGGGTGTGGT GTCCAACGTG GTGCCGGTCG AGGACATGCC GTACATGGCC TCGGGCGAGA CCGTGGACAT CGTGCTGAAC CCGCTGGGCG TGCCGTCGCG TATGAACATC GGCCAGATCC TGGAAGTGCA TCTGGGCTGG GCGGCCAAGG GCCTGGGCCG CAAGATCCAG GCGATGATGG AAGCCCAGGC GGCGGTTGCC GACCTGCGCA AGTTCCTGGA CGACATCTAC AACCACGATG ACACCAACGT GGCCAACCGT GTCGACCTGT CGCAGTTCAG CGACGAGGAG CTGCTGCGTC TGGCGCGTAA CCTCACCGAC GGCGTGCCGA TGGCCACCCC GGTGTTCGAC GGCGCCACCG AAGCGGAAAT CAAGCGCATG CTGGAACTGG CCGACCTGCC GAGCAGTGGC CAGACCCAGC TGTACGACGG CCGCACCGGT GAAGCGTTCG ATCGCCACAC CACCGTCGGT TACATGCACT ACCTGAAGCT GAACCACCTG GTCGACGACA AGATGCACGC CCGTTCGACC GGTCCGTACT CGCTCGTCAC CCAGCAGCCG CTGGGCGGCA AGGCGCAGTT CGGCGGCCAG CGCTTCGGTG AAATGGAAGT CTGGGCGCTG GAAGCCTACG GCGCGGCCTA CACCCTGCAG GAAATGCTGA CGGTGAAGTC CGATGACGTG CAGGGCCGCA ACCAGATGTA CAAGAACATC GTCGACGGTG AGCACGAGAT GGTCGCGGGC ATGCCGGAAT CCTTCAACGT GCTCGTGAAG GAAATCCGCT CGCTGGCCAT CAACATGGAA CTGGAAGACA ACTGA
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Protein sequence | MTSYSFTEKK RIRKDFGKQR SILEVPFLLA IQVDSYREFL QENVDPAKRT DHGLHAALKS VFPIASYSGN AALEYVGYKL GEPVFDEREC RQRGMSYGAP LRVTVRLVIY DRESSTKAIK YVKEQEVYLG EIPLMTENGT FIVNGTERVI VSQLHRSPGV FFDHDRGKTH SSGKLLYSAR IIPYRGSWLD FEFDPKDALF TRIDRRRKLP VSILLRALGY SNEEMLAEFF EINTFHINPD EGVQLELVPE RLRGETLGFD LADGDKVIVE AGKRITARHI KQLEASGIAA LAVPDDYIVG RILSHDVVDA STGELLAQAN DEITDEQLQA FRKAGVDAVG TLWVNDLDRG PYLSNTLRID PTKTQLEALV EIYRMMRPGE PPTKDAAQNL FHNLFFTFER YDLSAVGRMK FNRRVGRKET TGEAVLYDRK YYGERNDEES KRLVAAHGDS SDILDVIKVL TEIRNGRGVV DDIDHLGNRR VRSVGEMAEN VFRVGLVRVE RAVKERLSMA ESEGLTPQEL INAKPVAAAI KEFFGSSQLS QFMDQNNPLS EVTHKRRVSA LGPGGLTRER AGFEVRDVHP THYGRVCTIE TPEGPNIGLI NSLAVYARTN QYGFLETPYR KVVDGKVYDE VEFLSAIEEN EYVIAQANAL TNADSVLTEQ FVPCRFQGES LLKPPAEVHF MDVSPMQTVS IAAALVPFLE HDDANRALMG ANMQRQAVPT LRAQKPLVGT GIERAVARDS GVTVNARRGG EIVQIDAARI VVKVVEEEIV GATDAGVDIY NLVKYTRSNQ NTCINQRPLV QVGDIIARGD VLADGPSTDI GELALGQNML IAFMPWNGYN FEDSILLSER VVEEDRYTTI HIEELTCVAR DTKLGPEEIS ADIPNVSEQA LNRLDESGVV YIGAEVRAGD IMVGKVTPKG ESQLTPEEKL LRAIFGEKAS DVKDSSLRVP PGMDGTVIDV QVFTRDGIEK DKRARQIEES EIKRVKKDFD DQFRILEAAI YMRLRSQIVG KVVNGGAGLK KGDVISDAFL DGLKKADWFA LRMKDEDASE AIERAQKQIQ AHEKEFERRF ADKRGKITAG DDLAPGVLKM VKVFLAVKRR IQPGDKMAGR HGNKGVVSNV VPVEDMPYMA SGETVDIVLN PLGVPSRMNI GQILEVHLGW AAKGLGRKIQ AMMEAQAAVA DLRKFLDDIY NHDDTNVANR VDLSQFSDEE LLRLARNLTD GVPMATPVFD GATEAEIKRM LELADLPSSG QTQLYDGRTG EAFDRHTTVG YMHYLKLNHL VDDKMHARST GPYSLVTQQP LGGKAQFGGQ RFGEMEVWAL EAYGAAYTLQ EMLTVKSDDV QGRNQMYKNI VDGEHEMVAG MPESFNVLVK EIRSLAINME LEDN
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