Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smal_0556 |
Symbol | |
ID | 6477460 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Stenotrophomonas maltophilia R551-3 |
Kingdom | Bacteria |
Replicon accession | NC_011071 |
Strand | + |
Start bp | 659404 |
End bp | 661605 |
Gene Length | 2202 bp |
Protein Length | 733 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 642729701 |
Product | general secretion pathway protein D |
Protein accession | YP_002026944 |
Protein GI | 194364334 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.234016 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.128846 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACCTGC GTTTCCTTCC CTGGTCCTTT GCCCTCGCGC TGCTGGTTGG CTGCAGCACG GTGTCCGCGC CGCACGTGCA GCGCAAAGGC AACCTGACGT CCACGACCGA TGCCGGCCAG GCGGCGGAAG TGGCTGCCGA TGCCGCCCGT GACAGCCAGG GCGCGCCCCA GGCGGTCATC CGCCGCGGCA CCGGCACCAT GATCAACCGC GAAGCCGCGC GCGCGCCGGC GCCGGCACTG CACGGCGCCA GTACCGGCGA GGCGACCTTC AACTTCGAGG GGGAATCGGT GCACGCGGTG GTCAAGGCCA TCCTCGGTGA CATGCTCGGG CAGAACTACG TGATCGCACC GGGAGTGCAG GGCACGGTCA CCCTGGCCAC GCCGAAACCG GTGTCGCCGG CGCAGGCGCT GAACCTGCTG GAGATGGTGC TGGGCTGGAA CAACGCACGC ATGGTGTACA GCGGTGGTCG CTACAACATC GTGGCTGCCG ACCAGGCATT GGCCGGCACT GTCGCGCCGA GTACGGCCCC GGCGGCCAGC GCACGCGGTT TCGAGGTGCG GGTGATCCCG CTGCAGTTCA TCTCCGCCAC TGAAATGAAG AAGGTGCTGG AGCCGTACGC GCGCCCCAAC GCCATCGTCA ACGTCGACAG CGGCCGCAAC GTGATCACCC TCGGTGGTAC CCGCGCCGAG CTGGAAAACT ACATGCGCAC CGTCGAGATC TTCGACGTCG ACTGGTTGTC GGGCATGTCG GTGGGCGTGT TCCCGATCCA GTCGGGCAAG GCCGAGCAGG TTGCAGCAGA TCTGGAGAAG GTGTTCGGTG AGGAGAGCAA GACCCCCAGC GCCGGCATGT TCCGCTTCCT GCCGCTGGAG AACGCCAACG CGGTGCTGGT GATCACCCCG CAGGTGCGTT ACCTGGACCA GATCCAGCAA TGGCTGGACC GCATCGATAC CGCCGGCGGC AGCGCCCGCC TGTTCTCCTA CGAACTGCGC TACATCAAGG CACGCGACCT CGCCGAACGC CTCAGCGAAG CCTTCGCCAG CAGCGGCAAC CGCGGCGGCT CCAGCCCCGG CTCATTGGCG CCCGGTGCGA TTCCGTCGCA GCTGGGCAGC GATGGCGACC GCGGCATGGA CAGCAACAAC AGCAGCAACT TCGGTTCAAC GTCGGGCGGC AGCTCCAGCG GCGGCGGTAG TGGCAGCATG AACCTGCCGC AGCGCCAGTC CGGCAACGTC AGCGTCAGCC TGGAAGTGGA AGGCGACCGT GTCGGCGTAT CGGCGGTCGA GGAAACCAAC ACCCTGCTGG TCCGTTCGAC CCCGCAGGCC TGGCGCTCGA TCCGCGAAGT GATCGAGAAG CTGGACGTGA TGCCGCTGCA GGTGCACATC GAGGCGCAGG TGGCTGAGGT CGCCCTGGAG GGTGACCTGA AGTACGGCGT GAATTGGTTC TTCGACAACG CGGTGGCCGG GCGCGCGCTG ACCGGCGCAT TGGCCGGCGT GACCCTGCCG GCCGCCGCCG GCGGCTCCTG GAGCAGCCTC GCCGGTGCCG CGACCGGTGG CGAAGGCCTC GGCTGGGCAT TCACCGGGCA CAATGGTGCC GCAGTCGTGA GCGCGCTGGA CAAGGTTACC GATGTGCGCC TGCTGCAGAC CCCTTCGGTG TTCGTGCGCA ACAACGCTGA GGCCACGCTC AATGTGGGCG ACAAGGTGCC GATCAACACC ACCACGGTGA ACACCGGCAT CGGCACCAGC AGTTACAGCT CGGTGCAGTA CATCGACACC GGCGTGATCC TCAAGGTGCG CCCGCGGGTG ACCCGCGACG GCACGGTGTT CCTCGACATC GTGCAGGAAG TGAGCAGCGC CTCGAACGTG CCGGAGAACT GCAACCCGCA GGAGCGCAAC TGCAACCCGC GGATTTCCAC CAAGAAGCTG TCGACCGAAG CGGCGGTGCA GAGCGGCGAC ACCATCATGC TGGCCGGCCT GATCACCGAC ACGGGCACCG ATGGCAGCAG CGGCATCCCC GGCCTGAGCC GGATTCCGGT GGTGGGCGCA CTGTTCGGGC AGAAGAGCCG CACCAGCCGC CGTTCGGAAG TGATCGTGCT GCTGACGCCG AGCATCGTCC GCAACAGCCA GGAAGCGCGC AACCTGACCG ACGAGTACAG CCAGCGCTTC CGCGCGATGG AACCGCTGAA CCAGCCGCGC GCAAAGAAGT AA
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Protein sequence | MNLRFLPWSF ALALLVGCST VSAPHVQRKG NLTSTTDAGQ AAEVAADAAR DSQGAPQAVI RRGTGTMINR EAARAPAPAL HGASTGEATF NFEGESVHAV VKAILGDMLG QNYVIAPGVQ GTVTLATPKP VSPAQALNLL EMVLGWNNAR MVYSGGRYNI VAADQALAGT VAPSTAPAAS ARGFEVRVIP LQFISATEMK KVLEPYARPN AIVNVDSGRN VITLGGTRAE LENYMRTVEI FDVDWLSGMS VGVFPIQSGK AEQVAADLEK VFGEESKTPS AGMFRFLPLE NANAVLVITP QVRYLDQIQQ WLDRIDTAGG SARLFSYELR YIKARDLAER LSEAFASSGN RGGSSPGSLA PGAIPSQLGS DGDRGMDSNN SSNFGSTSGG SSSGGGSGSM NLPQRQSGNV SVSLEVEGDR VGVSAVEETN TLLVRSTPQA WRSIREVIEK LDVMPLQVHI EAQVAEVALE GDLKYGVNWF FDNAVAGRAL TGALAGVTLP AAAGGSWSSL AGAATGGEGL GWAFTGHNGA AVVSALDKVT DVRLLQTPSV FVRNNAEATL NVGDKVPINT TTVNTGIGTS SYSSVQYIDT GVILKVRPRV TRDGTVFLDI VQEVSSASNV PENCNPQERN CNPRISTKKL STEAAVQSGD TIMLAGLITD TGTDGSSGIP GLSRIPVVGA LFGQKSRTSR RSEVIVLLTP SIVRNSQEAR NLTDEYSQRF RAMEPLNQPR AKK
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