Gene Smal_0556 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmal_0556 
Symbol 
ID6477460 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStenotrophomonas maltophilia R551-3 
KingdomBacteria 
Replicon accessionNC_011071 
Strand
Start bp659404 
End bp661605 
Gene Length2202 bp 
Protein Length733 aa 
Translation table11 
GC content67% 
IMG OID642729701 
Productgeneral secretion pathway protein D 
Protein accessionYP_002026944 
Protein GI194364334 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1450] Type II secretory pathway, component PulD 
TIGRFAM ID[TIGR02517] general secretion pathway protein D 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.234016 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.128846 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCTGC GTTTCCTTCC CTGGTCCTTT GCCCTCGCGC TGCTGGTTGG CTGCAGCACG 
GTGTCCGCGC CGCACGTGCA GCGCAAAGGC AACCTGACGT CCACGACCGA TGCCGGCCAG
GCGGCGGAAG TGGCTGCCGA TGCCGCCCGT GACAGCCAGG GCGCGCCCCA GGCGGTCATC
CGCCGCGGCA CCGGCACCAT GATCAACCGC GAAGCCGCGC GCGCGCCGGC GCCGGCACTG
CACGGCGCCA GTACCGGCGA GGCGACCTTC AACTTCGAGG GGGAATCGGT GCACGCGGTG
GTCAAGGCCA TCCTCGGTGA CATGCTCGGG CAGAACTACG TGATCGCACC GGGAGTGCAG
GGCACGGTCA CCCTGGCCAC GCCGAAACCG GTGTCGCCGG CGCAGGCGCT GAACCTGCTG
GAGATGGTGC TGGGCTGGAA CAACGCACGC ATGGTGTACA GCGGTGGTCG CTACAACATC
GTGGCTGCCG ACCAGGCATT GGCCGGCACT GTCGCGCCGA GTACGGCCCC GGCGGCCAGC
GCACGCGGTT TCGAGGTGCG GGTGATCCCG CTGCAGTTCA TCTCCGCCAC TGAAATGAAG
AAGGTGCTGG AGCCGTACGC GCGCCCCAAC GCCATCGTCA ACGTCGACAG CGGCCGCAAC
GTGATCACCC TCGGTGGTAC CCGCGCCGAG CTGGAAAACT ACATGCGCAC CGTCGAGATC
TTCGACGTCG ACTGGTTGTC GGGCATGTCG GTGGGCGTGT TCCCGATCCA GTCGGGCAAG
GCCGAGCAGG TTGCAGCAGA TCTGGAGAAG GTGTTCGGTG AGGAGAGCAA GACCCCCAGC
GCCGGCATGT TCCGCTTCCT GCCGCTGGAG AACGCCAACG CGGTGCTGGT GATCACCCCG
CAGGTGCGTT ACCTGGACCA GATCCAGCAA TGGCTGGACC GCATCGATAC CGCCGGCGGC
AGCGCCCGCC TGTTCTCCTA CGAACTGCGC TACATCAAGG CACGCGACCT CGCCGAACGC
CTCAGCGAAG CCTTCGCCAG CAGCGGCAAC CGCGGCGGCT CCAGCCCCGG CTCATTGGCG
CCCGGTGCGA TTCCGTCGCA GCTGGGCAGC GATGGCGACC GCGGCATGGA CAGCAACAAC
AGCAGCAACT TCGGTTCAAC GTCGGGCGGC AGCTCCAGCG GCGGCGGTAG TGGCAGCATG
AACCTGCCGC AGCGCCAGTC CGGCAACGTC AGCGTCAGCC TGGAAGTGGA AGGCGACCGT
GTCGGCGTAT CGGCGGTCGA GGAAACCAAC ACCCTGCTGG TCCGTTCGAC CCCGCAGGCC
TGGCGCTCGA TCCGCGAAGT GATCGAGAAG CTGGACGTGA TGCCGCTGCA GGTGCACATC
GAGGCGCAGG TGGCTGAGGT CGCCCTGGAG GGTGACCTGA AGTACGGCGT GAATTGGTTC
TTCGACAACG CGGTGGCCGG GCGCGCGCTG ACCGGCGCAT TGGCCGGCGT GACCCTGCCG
GCCGCCGCCG GCGGCTCCTG GAGCAGCCTC GCCGGTGCCG CGACCGGTGG CGAAGGCCTC
GGCTGGGCAT TCACCGGGCA CAATGGTGCC GCAGTCGTGA GCGCGCTGGA CAAGGTTACC
GATGTGCGCC TGCTGCAGAC CCCTTCGGTG TTCGTGCGCA ACAACGCTGA GGCCACGCTC
AATGTGGGCG ACAAGGTGCC GATCAACACC ACCACGGTGA ACACCGGCAT CGGCACCAGC
AGTTACAGCT CGGTGCAGTA CATCGACACC GGCGTGATCC TCAAGGTGCG CCCGCGGGTG
ACCCGCGACG GCACGGTGTT CCTCGACATC GTGCAGGAAG TGAGCAGCGC CTCGAACGTG
CCGGAGAACT GCAACCCGCA GGAGCGCAAC TGCAACCCGC GGATTTCCAC CAAGAAGCTG
TCGACCGAAG CGGCGGTGCA GAGCGGCGAC ACCATCATGC TGGCCGGCCT GATCACCGAC
ACGGGCACCG ATGGCAGCAG CGGCATCCCC GGCCTGAGCC GGATTCCGGT GGTGGGCGCA
CTGTTCGGGC AGAAGAGCCG CACCAGCCGC CGTTCGGAAG TGATCGTGCT GCTGACGCCG
AGCATCGTCC GCAACAGCCA GGAAGCGCGC AACCTGACCG ACGAGTACAG CCAGCGCTTC
CGCGCGATGG AACCGCTGAA CCAGCCGCGC GCAAAGAAGT AA
 
Protein sequence
MNLRFLPWSF ALALLVGCST VSAPHVQRKG NLTSTTDAGQ AAEVAADAAR DSQGAPQAVI 
RRGTGTMINR EAARAPAPAL HGASTGEATF NFEGESVHAV VKAILGDMLG QNYVIAPGVQ
GTVTLATPKP VSPAQALNLL EMVLGWNNAR MVYSGGRYNI VAADQALAGT VAPSTAPAAS
ARGFEVRVIP LQFISATEMK KVLEPYARPN AIVNVDSGRN VITLGGTRAE LENYMRTVEI
FDVDWLSGMS VGVFPIQSGK AEQVAADLEK VFGEESKTPS AGMFRFLPLE NANAVLVITP
QVRYLDQIQQ WLDRIDTAGG SARLFSYELR YIKARDLAER LSEAFASSGN RGGSSPGSLA
PGAIPSQLGS DGDRGMDSNN SSNFGSTSGG SSSGGGSGSM NLPQRQSGNV SVSLEVEGDR
VGVSAVEETN TLLVRSTPQA WRSIREVIEK LDVMPLQVHI EAQVAEVALE GDLKYGVNWF
FDNAVAGRAL TGALAGVTLP AAAGGSWSSL AGAATGGEGL GWAFTGHNGA AVVSALDKVT
DVRLLQTPSV FVRNNAEATL NVGDKVPINT TTVNTGIGTS SYSSVQYIDT GVILKVRPRV
TRDGTVFLDI VQEVSSASNV PENCNPQERN CNPRISTKKL STEAAVQSGD TIMLAGLITD
TGTDGSSGIP GLSRIPVVGA LFGQKSRTSR RSEVIVLLTP SIVRNSQEAR NLTDEYSQRF
RAMEPLNQPR AKK