| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_0022 |
|---|
| Symbol | |
|---|
| ID | 6477498 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stenotrophomonas maltophilia R551-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011071 |
|---|
| Strand | + |
|---|
| Start bp | 26772 |
|---|
| End bp | 28865 |
|---|
| Gene Length | 2094 bp |
|---|
| Protein Length | 697 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 642729155 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_002026410 |
|---|
| Protein GI | 194363800 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00000000255766 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAATCCCG CCGCACGACG CCACTGCCTG CCGTTGTCCG CCCTGCTGCT GTCGCCACTG
GCGGCCATGG CCGAGCCTGC GCCCATCGCC CTGCCCGCCG TGCAGGTGCA GGCGGCGCGG
GTGCCGGGCA TCGACCCGTT CGCGCTGCCG GCCAGCCAGG ACACGGTCTG GATCGACGCC
GGCCGGGCCG GCAACAGCGT GCAGTTGTCC GAGGCACTGG CCGGGGTGCC GGGACTGCTG
GCGCGCGATC GGCAGAACTT CGCCCAGGAC ACGCAGCTGT CGATCCGTGG CTTTGGCGCG
CGCTCGACCT TCGGTGTGCG CGGCGTGCGG GTGTTGATCG ACGGGGTGCC CGCGACCATG
CCCGATGGCC AGGGCCAGCT GTCGCATGCC AGCCTGCTGG GTGCCGAACG CATCGAGGTG
CTGCGCGGGC CGTTCTCGGC GCTGTACGGC AATTCCTCCG GCGGCGTGCT GCAGGTGTGG
AGCGCGCAGG GCCAGGCCAG CGACCCGTGG CGGTTGCGCC TCAACGCAGG TGCCGACAAC
ACGCTCAGCA TCGGCGCGCA GCTGAAGGGA GCCAGCCACG GGCTGGACTA CAACATCGCC
GCCAATCACT TCCGCACCGA TGGCTGGCGC GAACACAGCC GCGCGCGCCG CGAATCGCTC
ACCGCGCGCA TCGGCGGCGA TCTGGGCGGT GGGCGACTGG AGCTGCTGCT CAACGCGCTG
GATGCGCCGG ATGCGCAGGA CCCGCTGGGC CTGACCCGCG CGCAGGTGGC GGCCGACCCA
CGCCAGGCCA CTGCGGTGGC GCACCAGTAC AACACCCGCA AATCGGTGCG CCAGCAGCAG
GCCGGGTTGC GTTGGACCCG CGAAACCGAC GCCCAGCGCT GGCAACTGAT GGGCTATGCC
GGGCAGCGCG CGGTGCGCCA GTACCTGCCG ATTCCGCCTG CAGCCCAGAC CAACAGCCCG
CTGCATGCCG GCGGGGTGAT CGATCTGGAG GGCGGCTACG GCGGATTGGA CGCGCGCTGG
GGCTGGCACG GCGACCTCGC CGGTCGACCG CTGGATCTGG TGGCCGGGCT CAGTGCGGAC
CGCCAGCGCC AGCACCGCAC CGGCTACGAG AACTTCATCG GCAGCGCCCT CGGCGTGCGC
GGACGCCTGC GCCGCGACCA GATCGACACG GTGCAGAACG TGGACCAGTT CGCCCAGGCC
TGGTGGCAGT GGAGCCCGCG CTGGTCGCTG CTGGCCGGGC TGCGCCACAG CGCGGTGCGC
TTCGAATCCG ATGACCGCTA CATCACCGGG CGCAATCCGG ACGACAGCGG CCGCCGACGC
TACCAGGCGA CCACGCCGGT GGCAGGCGTC AGCTTCGAAG CCAGCCCGCA GTGGCGGCTG
CACGCGGCCG TGGGGCGTGG TTTCGAGACC CCCACCTTCA ACGAACTGGG TTATCGCGCC
GACGGCCAAG CGGGATTGGC ACTGGATCTG GCGGCCGCGC GCAGCCGCAA TCTGGAGGTA
GGCAGCAAAT GGCACGCACA GGACGGAACC CAGCTTGATA TCAGCCTGTT CCGCGCAGAT
ACCGACGATG AGTTGGCCGT TGCCAGCAAC ATCGGCGGGC GCAGTACCTA CCGCAATATC
GGTCGCACCC GTCGCCAAGG CGTGGAACTA CAGTATCGCC AGCCCTTGGC CGAGCAGCTG
GAACTGCAGC TGGCATGGAC CTGGCTGCAG GCGCAGGTGC GCTCGCCGTA CCTGACCTCG
AACAACGTGG TCGCCGCGGG CAGCCGTCTG CCTGGTGTGC CGCGCCAACA GGCCTTCGCC
CGGCTGCAGT GGACACCCGC TGACTGGCAG TGGGCGCTGG AGGCGTCCGC CAGCAGCGAT
ACCGTGGTCA ACGACGTGGC CACCGAGCGC GCGCCAGGCT ACGCGCTGCT GCACGTGGAA
GGCGGCCGCC GCTGGACCCT GCCGGGCGGC GAGCTGCGTG CCTTCGCGCG GTTGGAGAAC
GTGCTGGACC AGGCCTACAT TGGCTCGGTG ATCGTCAATG ACGGCAATGG CCGCTTCTAC
GAGCCGGGAC CGGGACGACG GGCCAGCCTC GGGCTGCAGT GGTCGTGGCG TTGA
|
|---|
| Protein sequence | MNPAARRHCL PLSALLLSPL AAMAEPAPIA LPAVQVQAAR VPGIDPFALP ASQDTVWIDA
GRAGNSVQLS EALAGVPGLL ARDRQNFAQD TQLSIRGFGA RSTFGVRGVR VLIDGVPATM
PDGQGQLSHA SLLGAERIEV LRGPFSALYG NSSGGVLQVW SAQGQASDPW RLRLNAGADN
TLSIGAQLKG ASHGLDYNIA ANHFRTDGWR EHSRARRESL TARIGGDLGG GRLELLLNAL
DAPDAQDPLG LTRAQVAADP RQATAVAHQY NTRKSVRQQQ AGLRWTRETD AQRWQLMGYA
GQRAVRQYLP IPPAAQTNSP LHAGGVIDLE GGYGGLDARW GWHGDLAGRP LDLVAGLSAD
RQRQHRTGYE NFIGSALGVR GRLRRDQIDT VQNVDQFAQA WWQWSPRWSL LAGLRHSAVR
FESDDRYITG RNPDDSGRRR YQATTPVAGV SFEASPQWRL HAAVGRGFET PTFNELGYRA
DGQAGLALDL AAARSRNLEV GSKWHAQDGT QLDISLFRAD TDDELAVASN IGGRSTYRNI
GRTRRQGVEL QYRQPLAEQL ELQLAWTWLQ AQVRSPYLTS NNVVAAGSRL PGVPRQQAFA
RLQWTPADWQ WALEASASSD TVVNDVATER APGYALLHVE GGRRWTLPGG ELRAFARLEN
VLDQAYIGSV IVNDGNGRFY EPGPGRRASL GLQWSWR
|
|---|
| |