| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_0016 |
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| Symbol | |
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| ID | 6477492 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Stenotrophomonas maltophilia R551-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011071 |
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| Strand | + |
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| Start bp | 17350 |
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| End bp | 20574 |
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| Gene Length | 3225 bp |
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| Protein Length | 1074 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 642729149 |
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| Product | YD repeat protein |
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| Protein accession | YP_002026404 |
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| Protein GI | 194363794 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.15112 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0000418837 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATGCACT TTGCAACACG GAACACTCTG AAGTCCCGTC TTCTTCTTCT GCCGCTGCTT
TCCCTGCCGA TGACATTGGC AACGGCGGCA AACACTCTCG AAACCGTTCA AGTCACCGCC
AAACGCCCTG CTGGAGGTGG CGGTGTAGGT GGTTTTGGAT TTGGCGGCGG CAGTGGTGTC
CACCTGTCCG AGTCTCAAAT GGACAATGGC GGCGGCGGCG GTGCAATTCC GACCGAAACC
GCGAAGGAGC AGCCGACCGA TGACAAAGAG AAGGACTGCA ATGGTCGTAA GGGCAATCCC
GTCGTGCTCT ACAGCGGCAA CAAGGTTGAA CCAGAACTTG ATTTCGCCAG TCAGGGCGAA
ATGGGACTGT TCCTGCAGCG CAACTACAAT CACTATTGGA GCGCGACCGG GCTGTTCGGC
AATCACTGGC TGAGCAACTT CGATTATTCG CTCGCATTCA CCGATGCAAA TCAGCTGGCG
TGGGTGCAAC GGCCTGACGG TCGCCGCATC AAGTACCTCA AGGATCCTGC CAGCGGTCGC
TGGTATGAGG ACAAGGCCCA GCCCATCGCG TACCTCTCCG CGAACGGCGA TGGCACGTTT
ACGCTTCGAA ACGAAAACAA CGGTACGGAG ACCTACAACG TCGAGGGCTA TATCACCCGA
CTCAGCAATG AGCAGGGCGT GAGCTGGACG TTCTCCTATG CTGACCGCTA TCTGCAGAAG
GTGACCCACT CCTCGGGACG CAGCGTCAGC TTTGGTTGGG CCAATGGACA GGTAAGCCAG
GTGACCGATC CAGCCGGCAA CGTCTATCGC TACACCTATA CCCCCAATGT TTTCGGGAAC
GGACGTGGCC GGCTTGCCAG CTCGACGCTG CCAGGCACAC CAGCGACGAC GATCAGCTAC
CACTACGAAG ATGCTCGCTT CCCGGGTGCC CTGACTGGCA AGTCCTTTGA TGGCGTGCGC
TATTCCACTT TTGCGTACGA CGCGGAGCGG CGCGCCATCA GCACGGAGCA CAACGGTGGC
ATTGAGCGAT TCCGCTTCAG CTATGCCGTG CGCAGCACCG AACCGGTGCT CCCGCCGCCC
GCACCGACTC GACCCGGCGG TGTCCGCGCC GACGAAGAGC GTGGATGGTG CGAACAGCGC
ACCGGAGGCT CACGCATCTG CTATCAACCG CGCTCGCTGC CTGTTGACTC GCTGCCGATG
GAGAGCGCTC TCGGTATGAC GGCCGCCGCT GCGCCGGGCC TTACGCGGCC CGTCGATATT
GATGTCACTG TGATCAACCC TCTTGGCCGT AGCACCACTT ACACGTTCAA GGACGGAAAG
ATGGTATCGA CCAAGGGTGA TCCGTCGCCG AACTGCCCTG CCAGCTACAA GGAGCAGAGT
TATGACGCCA ATGGATACCC GGATCTGGTC CATGACTTCC AGGACAATCT GACCAACTTC
GACTACAGCG CTCAGGGTTA CCTGCTGAAG CGGGTGGAAG CTGTCGGCAG CTCGGCCGAA
CGTACAACGT TGCAGGAGTG GGATACCACG CGGAACAGAC TCCTCAAGAC AACGGTGGTG
GGTGACCTCG AGGTTGCCTA CTCCTATGAC GATCGCGGAA ACGTGGCCAG CGCAACCGAG
CGCAATCTGA CGGCACGTGG CGTACCCAGC CAGACACGAG TGACCCGGAG CACGTATACC
TATCACGCAA ACGGATTGAA GGCCTCGATC AAAGTCGATG GACCGCTTGC GCAGGACGAC
GTCACCTCCG TGTTCAACGG CCAAGGCGAT CTGACCAGCG TCACCAACGC ACTCGGTCAT
ACGATCAGCT ATTCCAACTA CAACGGATTG GGGTTGCCGG GACGCATCGT CAATGCGAAT
GGTGGTGTGC GAGAGCTGAC GTATGACGGC CGCGGCCGCG TTGTATCCGA CAGAACCAGT
TCGGGAACCG GCTGGGCGAC TACCGCCATT GGCTACACCG CTGCAGGTGA CATCGCCTCG
CTTACCCAGC CTGATGGCGT GACAGTCCGC TACGGCTACG ATGCAGGGCG CCGCCTGACA
CAGGAAGTCC GTTCGATGGG AGACGGCAAG TGGGCGTGGA TCCGTCATAG CTACAACAAC
GCTTCCAATC GCACGCGCAC TGAGGTTTCA CAAACCGACT ATCCGATGGA TACGGTCGTA
AAGGGGATGA TTGATGAAAT CACCCACGAC GGCCAGTGGA ACTGGTTCGT TCGAGGTTGG
GCCTGCTCCA CCGGATCGGC GGGATCCATC CAGGTGGATG GTTACGCCGA TGGCAACGTC
TACCTGGGTA GCACTCAAGC AAACCTTGCC AGCGAGCCAG GAGTTGCCGC GGCGTGCCAA
GCATCAGGGA GTGCCTATAG GTATCAGTTG CCGATATCGC TAGCCCAGAG GCAACAGTTG
GGCGGTCGCA AGTTTTCCAT CTACGGCCAA TCTCCGCAGG GGCGCGGCCA GGACCGACCG
CTTCCGAACT CTGGGGTGCT CGCGATTCCA ACGGCAAAAA TCGTTGGTGA TATCGGCGGC
GTGACCCAGG ACGGAAACTG GAACTTCTTC CTGGAAGGCT GGGCCTGCTC GATCGGCGTG
GACTCATCGA TCGATGTGCA CGTCTATGCA GGAAACTCCG CTTGGGCAGG GGGCACCTTT
GTTGCCAGTG GTCGTGCCAA CCTCGCAACG GACGGCAACG TCGCCAGCGC TTGCCAAGCA
CGCGGAAATG CGTATTGGTT CAAGATTCCA CTCGATGGCA ATCTGCGATC AGCGCATGGT
GGCAAGGCGC TTTATGTTCA TGGCATCTCG CCGTGGGGTG GTGATCATCT GACCATCAAT
CGCTCGGGCA CTTTCACCGT CCCAGCCGTT GTGCGGAGTG CGGAGTTCGT TTCCTTCAAT
GCCTATCCCA CCAACATCAC CAATGGACGG CAAAGCACGT TGACCATACA GGTCCGCAAC
ACAGGCAACG TCGTATGGGA TGGAAACACT TACCTTGCAT GGGGCCAGGA CCAGCTGGAT
CAATCCCGAG CACTGGCCGG GCCGGTGTCC CCTGGAGGGA TTGCATCGTT CAGCATCGAC
GTCGCGCCCT ACCACGATGG CATCGGGATC AGGAGCTTTG CATACATTGC CCAGATGGCG
ACCAACGGTA TGGCTTGGGG ACCCCGGCCC TACACCATGA TCGCGGTAGA AAACGCGGAT
TGGTACTGCC CGCCAAACAG CACCACCTGC GAGGCGCCGA TGTGA
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| Protein sequence | MMHFATRNTL KSRLLLLPLL SLPMTLATAA NTLETVQVTA KRPAGGGGVG GFGFGGGSGV
HLSESQMDNG GGGGAIPTET AKEQPTDDKE KDCNGRKGNP VVLYSGNKVE PELDFASQGE
MGLFLQRNYN HYWSATGLFG NHWLSNFDYS LAFTDANQLA WVQRPDGRRI KYLKDPASGR
WYEDKAQPIA YLSANGDGTF TLRNENNGTE TYNVEGYITR LSNEQGVSWT FSYADRYLQK
VTHSSGRSVS FGWANGQVSQ VTDPAGNVYR YTYTPNVFGN GRGRLASSTL PGTPATTISY
HYEDARFPGA LTGKSFDGVR YSTFAYDAER RAISTEHNGG IERFRFSYAV RSTEPVLPPP
APTRPGGVRA DEERGWCEQR TGGSRICYQP RSLPVDSLPM ESALGMTAAA APGLTRPVDI
DVTVINPLGR STTYTFKDGK MVSTKGDPSP NCPASYKEQS YDANGYPDLV HDFQDNLTNF
DYSAQGYLLK RVEAVGSSAE RTTLQEWDTT RNRLLKTTVV GDLEVAYSYD DRGNVASATE
RNLTARGVPS QTRVTRSTYT YHANGLKASI KVDGPLAQDD VTSVFNGQGD LTSVTNALGH
TISYSNYNGL GLPGRIVNAN GGVRELTYDG RGRVVSDRTS SGTGWATTAI GYTAAGDIAS
LTQPDGVTVR YGYDAGRRLT QEVRSMGDGK WAWIRHSYNN ASNRTRTEVS QTDYPMDTVV
KGMIDEITHD GQWNWFVRGW ACSTGSAGSI QVDGYADGNV YLGSTQANLA SEPGVAAACQ
ASGSAYRYQL PISLAQRQQL GGRKFSIYGQ SPQGRGQDRP LPNSGVLAIP TAKIVGDIGG
VTQDGNWNFF LEGWACSIGV DSSIDVHVYA GNSAWAGGTF VASGRANLAT DGNVASACQA
RGNAYWFKIP LDGNLRSAHG GKALYVHGIS PWGGDHLTIN RSGTFTVPAV VRSAEFVSFN
AYPTNITNGR QSTLTIQVRN TGNVVWDGNT YLAWGQDQLD QSRALAGPVS PGGIASFSID
VAPYHDGIGI RSFAYIAQMA TNGMAWGPRP YTMIAVENAD WYCPPNSTTC EAPM
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