| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Paes_2352 |
|---|
| Symbol | |
|---|
| ID | 6459043 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prosthecochloris aestuarii DSM 271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011061 |
|---|
| Strand | + |
|---|
| Start bp | 12401 |
|---|
| End bp | 13591 |
|---|
| Gene Length | 1191 bp |
|---|
| Protein Length | 396 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 642729083 |
|---|
| Product | P-type conjugative transfer protein TrbL |
|---|
| Protein accession | YP_002019697 |
|---|
| Protein GI | 194335131 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3846] Type IV secretory pathway, TrbL components |
|---|
| TIGRFAM ID | [TIGR02783] P-type conjugative transfer protein TrbL |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.366259 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATACAG GCATCCTGAC AAGTACCCTG CATACCTTCA TTGATGCTTT TAATGCAGGT
TACGCAAAAC TATACCCTCA TATCGAATGG CTTATATGGG TTATGCTCGG TATAGAGCTC
GTAATGCTCG GTCTTTGGTG GGCTCTTGGT GGTGGTGAAC AGTTGGCTGC TGTGATGAAG
AAGCTGCTCT ATTTGCTTGT ATGGCTGTGG ATTGTTCAGA ATTTTCAGAC GCTAGCAAAA
ACTTTTGTTT GGTCACTTGC TGAGGCTGGT GAAATAGCTG GAGGAAGAAC GCCTGATCAC
AAACTCCTTA CTGACCCTAC TGCTATCATC AATATTGGCC TGGATATTTC AGCCCCATTG
GCTGATCAGG TTGGTAGAGA AGGGTGGGAT ATCGGAAATG CGCTAGCCTT CTCCCTGATG
TGGTTGATGT CTGCGCTTGC ATTTCTGATC ATGGGTTGGC AGATGTTCTA TGCGTTATTG
GAGTTTTACA TCCTAATTAC ACTTGTTGGA ATCCTATTGC CTTTTGGTTT TTTCGAACCA
ACAAAATTCA TGGCTGAAAA ATCGATTGGG GCTGTGATAT CGTCTGGCGT AAAGTTGATG
GTGCTCTCCT TTATCATTGC TATCAGTCAT ACAATTTTAA CCTCACTGCC TATTCCTAGT
GGCTTTATTG ATCTTGAAAC AGGGTTAACC ATCGTATTGA TCAGCGGAGC CATAGCATTC
CTTGCCTGGA ATGCGCCAGG TATTGCTGCA GGTCTCGTTG TGGGAAGTCC GTCACTGTCG
GCTGCAACAG GCGCACAAAA CGCTCTGGCT GCCGGGCTGG CGGGTGGCGG TGCTCTTGTG
GCGACCGCAG CAGCCGGGAA GTTTGCAGCT ACCAAAGTAG CTAGTCTTGC TGGCAAATTC
GGCAGTGTGA GCACTAAATC AGGCCAGATG GCATCTCTTG CCAAAGCTGG TGGAGTTGGT
GGTATCGATG GACCAGGAGG GCCTTCGCAG ATGGGTGCCA CTCCGGGTGG TTCTCCCGGT
GGTTCCCCTT CCGGAACGCC TTCAGGCGGT TCATCGTCAT CCGGAGAAGA CAGGAACAAG
TCATCCGGAA AAAAGAACCC GCCAAAGTGG GCCCAGCAGG CACTGCAGGC TTCACGGCAT
ATACCTGAAG AAGCAAGGCC GTCGGGAGGA GACAGCAGTC CCAAACTGTA A
|
|---|
| Protein sequence | MNTGILTSTL HTFIDAFNAG YAKLYPHIEW LIWVMLGIEL VMLGLWWALG GGEQLAAVMK
KLLYLLVWLW IVQNFQTLAK TFVWSLAEAG EIAGGRTPDH KLLTDPTAII NIGLDISAPL
ADQVGREGWD IGNALAFSLM WLMSALAFLI MGWQMFYALL EFYILITLVG ILLPFGFFEP
TKFMAEKSIG AVISSGVKLM VLSFIIAISH TILTSLPIPS GFIDLETGLT IVLISGAIAF
LAWNAPGIAA GLVVGSPSLS AATGAQNALA AGLAGGGALV ATAAAGKFAA TKVASLAGKF
GSVSTKSGQM ASLAKAGGVG GIDGPGGPSQ MGATPGGSPG GSPSGTPSGG SSSSGEDRNK
SSGKKNPPKW AQQALQASRH IPEEARPSGG DSSPKL
|
|---|
| |