| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2917 |
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| Symbol | |
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| ID | 6462125 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | - |
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| Start bp | 3007830 |
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| End bp | 3012665 |
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| Gene Length | 4836 bp |
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| Protein Length | 1611 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 642729062 |
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| Product | SEFIR domain protein |
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| Protein accession | YP_002019676 |
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| Protein GI | 194337882 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4995] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.362761 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGGTAT TCATCAGCCA CTCTTCTGAG GACAAGCCGC AGGTTGAGCT GTTAGCCCAC
CTATTACGAG AACACGGATT CGAACCGTGG CTGGACAAGT GGGAGATCGG CCCCGGCGAT
GATATTGTCG CAAGCATCAA CGCCGGTCTG GATGCTGCAC ATGCGGGAAT CATCGTTTTC
TCGTCACACA CAAGATCGAG CCGCTGGGTG GAGGCAGAGG TCAGCTATCT GACCTACTCG
CGGATAGAGG AAGGGAAGCT GCTCATTCCG GTAGTCGTCG GCGACGGTGC ATGGGTTCCT
CCGCTTCTTC GTCCCCTGGC ACGCCGGGGT ATCGACCAGA TCGACGCGAT CATCGATGCG
CTGCGCTACC GCCAGGCCTT ACCATCGCCG ATTCGGCATC CGGAGCATGG AGGGATCGAG
CTGGTCTCGA TTTCGCTCCG GGAAACGTCG GGTGAGAACG GGAACCATGG GATCACGGTC
GAGGTGCGTA TCGGTGACGA TGTCCACGGA ACAGCCTCTC ATCCAACAAT CCCGAAAGCC
TTGTTCCAGG CCCGGAGCAA CTTTCTGACC TGCCATGTCA CTGGCTTGGG GCGCAATCCC
GTCGCTGCGG AACGGGCGGC GCAGGAATCA AGCCTCGTGG ATCTTGGCCG ACAGTTGCGG
GCATTCTGCT TACCGGAATC CTCAGGGCAG GCTCTGGCCG ATCTTCTCGA CGGAAGTCCG
GTTGGAACGC TGGTCGAGGT TCGGGTGGAA GCTTCGGGAT CCGCATTGCT CAGCTTGCCC
TACGATGCGC TGCGCCTGCC CGATGATCGC CTGTTGGCTA CCCATCCCGC CTGCATCCTG
CTGCGACGAC CACCTGATCT GAAAGGTACC GCAAGCCCGG CATTGGCAGG GCCGCTGAAG
ATTCTCGTTG CGGTCGGAGC CCCTGACGAG GGAACAACCT CCTCCGCAGT GCTCGATTAT
GAACGTGAGG TACAGAACAT CCTCGATGCT GTGGAACCGC TGCAGCGGCA TGAAAATGTC
GAGGTGCATA TTCTTGAGGT TGGCCATCCG GACGAGATCG CCAGGGCGAT TGAGCGCGAT
GCCTACCATG TGCTCCATCT TTCCTGCCAC GGCCGTCCGG GAATGCTGGA ACTGGAAGAT
GAAGAGGGGC AAGCCGTCTC GGTCACAGCA GACGAACTGA TCGTTCCGCT CAGGGAAAAG
GGAAGACCGC TCCCTCTTGT TTTCCTCAAT ACCTGCCACG GAGCCGTTCA GGATGGCCAC
ACAGTTAGCC TGGCTGAAGC CTTGCTGCAG TCGGGAGTGC CGGCAATACT GGCCATGCAG
ACCTCAGTCA GTGATCAATA CGCAAGCCGT CTCGCCCGAT CATTTTACCA ACATCTGGCA
GATGGCGAGC ATCTGCTTGC GAGTCGGGCG CTCGCGCAAG CCCGCAAAGA GCTTGAGCGT
GAGCGGCTTG CCGCTATCGA GCGGAACGAA CCACTTGATG CGACCCAACC CGAGTACGCA
ACTGCAGCAC TTTTCATAAG GGGTGACGAA CGGCCGCTGG CAAACTTCGC TCTCAACAAT
GATCCCCTCA AGCTCCAGCC GGTGCACGAC GCGGCTGGAG CCGTACCGCA ACTGCTCATC
GGTGATCTGA TTGGTCGGCG CAAGGAGCTG AGGGAGACAC TGCGCACTCT GCGTGCAGAA
TCCGGAGCCT TCTCCGGTGT GGTGCTGACC GGAATCGGGG GGATCGGCAA GAGCGCTTTG
GCAGGACGTG CCATGCAACG CCTTCGTCAG GATGGCTATC TCGTTCCGGT TCACGCCGGG
CGTTTCGATC TCTCCGGTAT TGTCACGGCA TTGCGTGATG AGCTTATTGC CTGTAATCCA
CCCTGGGCAA ATCGTATACT CGCTCAGTTC GACCACCCCG GTATCGATGA CCGCGATCGC
CTGCGGCTCG TCGCGCGAGT TCTCGATGAA CAGCGTGTGG TGCTGCTCCT CGATGACTTC
GAGCAGAACC TGCATCCGGG CGGTGATGCT TTTCTCAACC CCGACATCGC AGTCAGTATG
CAATTCCTGG CTGAACATGC CCAACGCGGA CGACTGCTTA TCACCTGCCG GAATCCGGTT
CCGGAGATGA GTTTATTTCT CCGGCACATT CCTGTCGGTG CACTCAGTCC GGCCGAAACC
CGCAAACTGG CACTACGCCT CGACGCGCTC AACCGCTCGG ACTCTGCGAC GGGTCTGGAG
CCGGAGCAAC GGCGCAGGAT ACTGCGCATA CTCGGCGGGC ACCCGCGTTC CCTTGAGTTT
ATCAATACCC TGTTGGGTGG TCAGCAGCGG CGTTTGCGTC ACATGATGAA GCGGCTCGAT
ACCCTGCTGA AAGAGGTCGG CCTTGCTCCA GGCAGCACCT TCGGTGACGC AGATCAGGCT
CTTCAGCACA CCCTGTCGAT AGCGGCACGC GATATCATGC TCGACGAGTT ACTTGAGACC
GCACGTGAAG AGCGGATCGA ACAGGTGCTG CTTCAGGTCG CGGTGTCGAA CCTGCCGGTC
ACACCAACTG GCGTCGCGAG AATGCTGGCA AGCGATGATG CTGCCGTTCC CGGTGACGTT
GCTGCCGCTG ATCGAGCGCT GGTTCGCCTG CACAACATGG CACTCCTTCA CCTTGATCCT
GATGACCGCT CTGCCTGGGT GCATCGGTGG ACGGCGGAGG GGTTGGAACA GCTTGACCCG
GCCAATCACG CAGAACGTTG CCTCCGGGCA GGTCGCTACC GGATGTGGCG GGTGCAAAAC
GAGAGCCACA GTCTGGACGA TCTGGTGGAG GCGGTGCGCA ACTTCCTCTC CGGCGCTGAC
TACGACCGAG CTTCGGAACT CGCGAACGCT TGCCTGGCGT TTCTGAGCCG GAACCAACGC
TCCCTCGATG TTGCTGCATT TGCCTCCGAG GTACTGGAAA CCCTGCCCAT AGAGCATTCC
GGGTTCGGTT CAATTGCCGA TCAAGAGGCG CAAGCGCACC TTGCGTTCGG ACAGACCGGC
ACAGCATTCC GGCGATACGA AACACTTGTT GCACGCTACG AGCGTCTTGC GCAGTCCGAG
CCGGATCGTG CCGACTACCA GCGCGACCTC TCCGTGTCGT ACAACAAGAT GGGTGACCTG
TACCGCGCTC TGGGTCAGGG TGAGCAAGCG CGCGATGCCT TTCTGAAGGC GCTTGAAATA
GCCAAGCGTC TTGCGCAGTC CGAGCCGGAT CGTGCCGACT ACCAGCGCGA CCTCTCCGTG
TCGTACAACA AGATGGGTGA CCTGTACCGC GCTCTGGGTC AGGGTGAGCA AGCGCGCGAT
GCCTTTCTGA AGGCGCTTGA AATAGCCAAG CGTCTTGCGC AGTCCGAGCC GGATCGTGCC
GACTACCAGC GCGACCTCTC CGTGTCGTAC AACAAGATGG GTGACCTGTA CCGCGCACTG
GGTCAGGGTG AGCAAGCGCG CGATGCCTTT CTGAAGGCGC TTGAAATAGC CAAGCGTCTT
GCGCAGTCCG AGCCGGATCG TGCCGACTAC CAGCGCGACC TCTCCGTGTC GTATGAGCGA
ATGGGTGACC TGTACCGCGC ACTGGGTCAG GGTGAGCAAG CGCGCGATGC CTTTCTGAAG
GCGCTTGAAA TAGCCAAGCG TCTTGCGCAG TCCGAGCCGG ATCGTGCCGA CTACCAGCGC
GACCTCTCCG TGTCGTATGA GCGAATGGGT GACCTGTACA GCGCTCTGGG TCAGGGTGAG
CAAGCGCGCG ATGCCTTTCT GAAGGATCTT GAAATAGCCA AGCGTCTTGC GCAGTCCGAG
CCGGATCGTG CCGACTACCA GCGCGACCTC TCCGTGTCGT ACAACAAGAT GGGTGACCTG
TACCGCGCTC TGGGTCAGGG TGAGCAAGCG CGCGATGCCT TTCTGAAGGC GCTCGACATC
CGGCAGCGTC TTGCGCAGTC CGAGCCGGAT CGTGCCGACT ACCAGCGCGA CCTCTCCGTG
TCGTACAACA AGATGGGTGA CCTGTACAGC GCTCTGGGTC AGGGTGAGCA AGCGCGCGAT
GCCTTTCTGA AGGATCTTGA AATAGCCAAG CGTCTTGCGC AGTCCGAGCC GGATCGTGCC
GACTACCAGC GCGACCTCTC CGTGTCGTAC AACAAGATGG GTGACCTGTA CCGCGCTCTG
GGTCAGGGTG AGCAAGCGCG CGATGCCTTT CTGAAGGCGC TCGACATCCG GCAGCGTCTT
GCGCAGTCCG AGCCGGATCG TGCCGACTAC CAGCGCGACC TCTCCGTGTC GTACAACAAG
ATGGGTGACC TGTACAGCGC TCTGGGTCAG GGTGAGCAAG CGCGCGATGC CTTTCTGAAG
GCGCTTGAAA TAGCCAAGCG TCTTGCGCAG TCCGAGCCGG ATCGTGCCGA CTACCAGCGC
GACCTCTCCG TGTCGTATGA GCGAATGGGT GACCTGTACC GCGCTCTGGG TCAGGGTGAG
CAAGCGCGCG ATGCCTTTCT GAAGGCGCTT GAAATAGCCA AGCGTCTTGC GCAGTCCGAG
CCGGATCGTG CCGACTACCA GCGCGACCTC TCCGTGTCGT ACAACAAGAT GGGTGACCTG
TACAGTGCTC TGGGTCAGGG TGAGCAAGCG CGCGATGCCT TTCTGAAGGC GCTCGACATC
CGGCAGCGTC TTGCGCAGTC CGAGCCGGAT CGTGCCGACT ACCAGCGCGA CCTCGCAGTA
TCTCTCGTCC TCTTTGCAAA GGCACATGAT TCTGCTGAAA AAGAGCATCT GAAACGTGCT
TTGTCGATTC TCGAGTCACT GAATGCGACA GGTCGATTGG CTCCTGTAGA CGAACCAATG
ATTACTGCCA TCCAAAACAT GATCTCAGGG GCGTGA
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| Protein sequence | MKVFISHSSE DKPQVELLAH LLREHGFEPW LDKWEIGPGD DIVASINAGL DAAHAGIIVF
SSHTRSSRWV EAEVSYLTYS RIEEGKLLIP VVVGDGAWVP PLLRPLARRG IDQIDAIIDA
LRYRQALPSP IRHPEHGGIE LVSISLRETS GENGNHGITV EVRIGDDVHG TASHPTIPKA
LFQARSNFLT CHVTGLGRNP VAAERAAQES SLVDLGRQLR AFCLPESSGQ ALADLLDGSP
VGTLVEVRVE ASGSALLSLP YDALRLPDDR LLATHPACIL LRRPPDLKGT ASPALAGPLK
ILVAVGAPDE GTTSSAVLDY EREVQNILDA VEPLQRHENV EVHILEVGHP DEIARAIERD
AYHVLHLSCH GRPGMLELED EEGQAVSVTA DELIVPLREK GRPLPLVFLN TCHGAVQDGH
TVSLAEALLQ SGVPAILAMQ TSVSDQYASR LARSFYQHLA DGEHLLASRA LAQARKELER
ERLAAIERNE PLDATQPEYA TAALFIRGDE RPLANFALNN DPLKLQPVHD AAGAVPQLLI
GDLIGRRKEL RETLRTLRAE SGAFSGVVLT GIGGIGKSAL AGRAMQRLRQ DGYLVPVHAG
RFDLSGIVTA LRDELIACNP PWANRILAQF DHPGIDDRDR LRLVARVLDE QRVVLLLDDF
EQNLHPGGDA FLNPDIAVSM QFLAEHAQRG RLLITCRNPV PEMSLFLRHI PVGALSPAET
RKLALRLDAL NRSDSATGLE PEQRRRILRI LGGHPRSLEF INTLLGGQQR RLRHMMKRLD
TLLKEVGLAP GSTFGDADQA LQHTLSIAAR DIMLDELLET AREERIEQVL LQVAVSNLPV
TPTGVARMLA SDDAAVPGDV AAADRALVRL HNMALLHLDP DDRSAWVHRW TAEGLEQLDP
ANHAERCLRA GRYRMWRVQN ESHSLDDLVE AVRNFLSGAD YDRASELANA CLAFLSRNQR
SLDVAAFASE VLETLPIEHS GFGSIADQEA QAHLAFGQTG TAFRRYETLV ARYERLAQSE
PDRADYQRDL SVSYNKMGDL YRALGQGEQA RDAFLKALEI AKRLAQSEPD RADYQRDLSV
SYNKMGDLYR ALGQGEQARD AFLKALEIAK RLAQSEPDRA DYQRDLSVSY NKMGDLYRAL
GQGEQARDAF LKALEIAKRL AQSEPDRADY QRDLSVSYER MGDLYRALGQ GEQARDAFLK
ALEIAKRLAQ SEPDRADYQR DLSVSYERMG DLYSALGQGE QARDAFLKDL EIAKRLAQSE
PDRADYQRDL SVSYNKMGDL YRALGQGEQA RDAFLKALDI RQRLAQSEPD RADYQRDLSV
SYNKMGDLYS ALGQGEQARD AFLKDLEIAK RLAQSEPDRA DYQRDLSVSY NKMGDLYRAL
GQGEQARDAF LKALDIRQRL AQSEPDRADY QRDLSVSYNK MGDLYSALGQ GEQARDAFLK
ALEIAKRLAQ SEPDRADYQR DLSVSYERMG DLYRALGQGE QARDAFLKAL EIAKRLAQSE
PDRADYQRDL SVSYNKMGDL YSALGQGEQA RDAFLKALDI RQRLAQSEPD RADYQRDLAV
SLVLFAKAHD SAEKEHLKRA LSILESLNAT GRLAPVDEPM ITAIQNMISG A
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