| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2779 |
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| Symbol | trmE |
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| ID | 6462323 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | - |
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| Start bp | 2869802 |
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| End bp | 2871223 |
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| Gene Length | 1422 bp |
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| Protein Length | 473 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 642728932 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_002019547 |
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| Protein GI | 194337753 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGATGC CCATCATCTT GCCCCGGCAG GAAGCTCCTG TTGCCGCCAT TGCCACACCG
GTTGGCGTTG GCGCTCTCGC GGTGCTGCGT ATCAGCGGCG AGGGGGTTTT TGATATCGCC
CAGAAGGTGT TTCGCAAAAA AAACAACCCG AACTTTCGCT TTACTGCATC GAAAGGGTTT
CGGGCCCATT TTGGTACGGT GCATGACAGC GAAGGGCTCA TTGACGAAGT GGTTGCCTTG
GTGTTTCGTT CACCAAACTC CTTTACTATG GAGGATATGG TTGAGTTCAC CTGTCATGGC
GGCCCTGTTG TTGTTCAGCA TATCCTTAAA GTGCTGCTTG ATGAGGGGTG CAGGCTGGCA
GAGCCGGGTG AGTTTACCCG GCGGGCATTT CTGAACGGGC GGATTGATCT TCTGCAGGCT
GAGGCGATTG GCGAGATGAT TCATGCCCGA ACAGAATCCG CATTCCGTAC CGCAGTGACC
CAGATGCAGG GAACCCTCTC CCTGAGGCTC GACGCCATGC GGGAGCTGCT TTTGCGCTCA
TGTGCCCTTC TGGAGCTCGA ACTTGATTTC AGCGAGGAGG ATGTTGAGTT CCAAAGTCGC
ACGCAACTTC AGGAAGAGCT TGCCGGGTTA CAGGAAGAGC TGCACCGTCT TGTGGATTCC
TATCAGCATG GCAGACTGTT GAAAGAGGGG GTTGCAACGG TGATTGCGGG CTTGCCGAAT
GCTGGCAAGT CAACCCTGCT CAATGTGCTG CTCGGCGAAG AGCGCTCCAT TGTGAGCCAT
ATGCCGGGCA CGACCCGCGA CTATATCGAA GAGTGCTTTC TCTATGAAAA AACCATGTTT
CGCCTGACCG ATACGGCCGG GTTGCGCGAA GGAGGGGAGG AGGTTGAGCA TGAAGGTATC
CGGCGCAGTT TCAAAAAAAT TTCTGAAGCC GATCTTCTTG TCTATCTCCT TGATATCAGC
CTTGAGAGCT ACCTTGATGA AGTTCCCCTG ATCCGAGATC TTCTTGAGCG TAACAGCAAT
GCCCGTATGA TTGTTGCGGC CAACAAAATT GACCTTGCAA CCGGGAGCGA AGAGCGGCTG
CAAAAACTCC GTGCGGCGAC CGGCTGCGAA GTGTGTGCAC TTTCTGCCGC CAAGGGAGAA
GGGCTTGAGG CTCTCAAGCG CCTGATGAGC ACGATGGTGG AAGGGCTTGA CAAGCTTCAT
GAAGCGAGTG TTCTGGTGAC CAGCCTGCGT CACTATGAGG CGCTCCGCAA CGCATCCGAT
GCCCTCGCAA ACGCGCAGGA ACTGATCACC CGTCAGGCCG AAACGGAACT CATAGCCTTC
GAGCTTCGTT CAGCCCTCGA CTATGTCGGA GAAATCACCG GAAAAGTGGT CAGCGAAGAG
ATCGTGAATC TCATCTTTGA GCAGTTCTGC ATCGGAAAGT GA
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| Protein sequence | MTMPIILPRQ EAPVAAIATP VGVGALAVLR ISGEGVFDIA QKVFRKKNNP NFRFTASKGF
RAHFGTVHDS EGLIDEVVAL VFRSPNSFTM EDMVEFTCHG GPVVVQHILK VLLDEGCRLA
EPGEFTRRAF LNGRIDLLQA EAIGEMIHAR TESAFRTAVT QMQGTLSLRL DAMRELLLRS
CALLELELDF SEEDVEFQSR TQLQEELAGL QEELHRLVDS YQHGRLLKEG VATVIAGLPN
AGKSTLLNVL LGEERSIVSH MPGTTRDYIE ECFLYEKTMF RLTDTAGLRE GGEEVEHEGI
RRSFKKISEA DLLVYLLDIS LESYLDEVPL IRDLLERNSN ARMIVAANKI DLATGSEERL
QKLRAATGCE VCALSAAKGE GLEALKRLMS TMVEGLDKLH EASVLVTSLR HYEALRNASD
ALANAQELIT RQAETELIAF ELRSALDYVG EITGKVVSEE IVNLIFEQFC IGK
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