| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2746 |
|---|
| Symbol | |
|---|
| ID | 6462632 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 2833293 |
|---|
| End bp | 2835410 |
|---|
| Gene Length | 2118 bp |
|---|
| Protein Length | 705 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642728902 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_002019517 |
|---|
| Protein GI | 194337723 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only
[S] Function unknown |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
[COG3347] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAACC TCTGGAAAGA TGCCGATCTT CAGCGCTCCG TAACCGCGCA GCGCAGCACC
GACGATATTC CTGTTGAACT TGCCGAACTT GTCTACGCCT CCCGTCTGCT CGGCAGCGAG
AGTTCGCTGG TGATGCACGG CGGAGGCAAC ACCTCGGTCA AAAGCGAGCT GCACGATATC
ATCGGCTACA GGGTCAATGT CATTTTCATC AAGGGGAGCG GCGTCAATCT GGCGGGTGTG
GATGCGCACG ATTTTATGCC GGTACGGATC GAGCCACTGC AGAAGCTGCA ACATCTCTAC
GCTACCGGCG GGCGCAGCAG CGAGGAGGAT ATACAGCAGT TCTCGACGCA ACGGTTCAAA
AACTTCCTCT ATCTGAACCT GTTCTACCTG ACCGAGCACA TGGTGAACCA TTCGCTTTCA
CCTTCGATTG AAACCCTGCT GCACGTGTTT CTGCCCCACC GGTTCATTTT CCATACGCAC
TCCACGGCGC TTCTGACGCT CAGCAACCAG CCCGACGGCC AGGATCTCTG CCGGGAGGTG
CTCGGAGAAT CGTTCGGCAT GGTGCCCTAT ATCAAGCCGG GTCTCGGGCT TGCCCGTTCG
GCCGCTGCGG CCTACGAATC GGCTCCCTCC ATCAGAGGCC TTGTGCTGCA GAAGCACGGG
CTCGTTACCT TTGCCGATAC TCCGGATGAG GCGTACCATT GCATGATCGA AAGCGCAAAT
CGTCTGGAAG AGCGCATAGC CCGGGCCGGA CGGAAGGTGT TCCCTTCGGT TTCGCTTCCC
GCCGGGATCG CATCCCTCGA GGATGTCGCG CCGGTTATCA GAGGGGCTGT CGTTGAAGAG
ATCATGCCCG GAAGCCGCGA TTACCGTCAG TTCGTGCTCG AATTCCGTAC TTCACCCGAT
ATTCTTGCCT ATGTCAACAG CGATTCTCTT TCCGATGTAA GCCAGAGAGG CGCCATGACC
CCGGATTTCA TTATCCGCAC CAAAAACCGG CCGCTGGTCG TTCCGGCACC CGATGCCTCT
GACCTCGACG CTTTCAAAAC GGCGATTCAT GAAGCGGTGG AGCAATACGA AGCGGAGTAC
AGGGCTTATT TCCTGCGCCG GCGGCTGGCT TCGGGAATCG AGGTTTCCAT GCTCGACCCG
CTGCCCAGGG TGGTGCTTGT GCCCGGTCTC GGTCTGTTCG GTCTCGGTCG GACCGCCCGG
GAGGCTGCAG TCAACGCGGA TATCGCCGAA AGCACGGCAT CGGCCATTCT CGACGCGGAA
TCGGCAGGAC GCTTCGAGTC GATTACCGAA CAGGAGGTTT TCGATATCGA GTACTGGGAG
ATGGAACAGG CCAAGATGAC GAAGGTCCGC CACGACGTGT TTGCCGGCAA GGTTGCCCTG
GTAACCGGTG CGGCAAGCGG CATCGGACTG GCGACGGCAA GGGCGTTCCG TCAGCGCGGC
GCCGAGCTGG TCATTCTGGA CCTGAACCCT GAGGCGCTTC AGCATGCGGC CGAAGAGCTC
GGCGGGGGAG TGCTTCCGAT TGCGTGCGAC GTTACCGACC GCGCTTCCGT CAGGCGGGCC
TTCGACAAGG TGTGCCGCCG TTACGGAGGG CTGGATATCG TAGTCTCAAA TGTAGGCGTC
GCCCTGCAGG GCCGCATAGG CGACGTTCCG GACGAGGTGC TTCGCCGGAG CTTCGAACTC
AACTTTTTTT CGCATCAGTC CATAGCCCAG GATGCGGTCA GGATCATGCG ACTGCAGGGA
ACCGGAGGAG TCCTGCTCTT CAACGTTTCC AAGCAGGCGG TCAATCCGGG TCCCGATTTC
GGGCCGTACG GCCTGCCCAA GGCGGCGACC ATGTTTCTCG TGCGCCAGTA TGCGCTCGAT
CACGGTCGCG ACGGCATCAG GGCAAACGGC ATCAATGCTG ACAGGATCCG CACCGGCCTT
CTGACCGACG AAATGATCAA AACCCGTTCG AAAGCGCGGG GGCTGAGCGA GCGGGAGTAT
ATGGCCGGCA ACCTTCTGCA GGTCGAGGTC ACGGCCGAGG ATGTCGCCGA GGCATTCGTG
CACCAGGCGC TCGAAACGAA GACGACCGGC TCGATCGTCA CGGTTGACGG CGGCAACATT
GCCGCCGCTC TGCGCTGA
|
|---|
| Protein sequence | MQNLWKDADL QRSVTAQRST DDIPVELAEL VYASRLLGSE SSLVMHGGGN TSVKSELHDI
IGYRVNVIFI KGSGVNLAGV DAHDFMPVRI EPLQKLQHLY ATGGRSSEED IQQFSTQRFK
NFLYLNLFYL TEHMVNHSLS PSIETLLHVF LPHRFIFHTH STALLTLSNQ PDGQDLCREV
LGESFGMVPY IKPGLGLARS AAAAYESAPS IRGLVLQKHG LVTFADTPDE AYHCMIESAN
RLEERIARAG RKVFPSVSLP AGIASLEDVA PVIRGAVVEE IMPGSRDYRQ FVLEFRTSPD
ILAYVNSDSL SDVSQRGAMT PDFIIRTKNR PLVVPAPDAS DLDAFKTAIH EAVEQYEAEY
RAYFLRRRLA SGIEVSMLDP LPRVVLVPGL GLFGLGRTAR EAAVNADIAE STASAILDAE
SAGRFESITE QEVFDIEYWE MEQAKMTKVR HDVFAGKVAL VTGAASGIGL ATARAFRQRG
AELVILDLNP EALQHAAEEL GGGVLPIACD VTDRASVRRA FDKVCRRYGG LDIVVSNVGV
ALQGRIGDVP DEVLRRSFEL NFFSHQSIAQ DAVRIMRLQG TGGVLLFNVS KQAVNPGPDF
GPYGLPKAAT MFLVRQYALD HGRDGIRANG INADRIRTGL LTDEMIKTRS KARGLSEREY
MAGNLLQVEV TAEDVAEAFV HQALETKTTG SIVTVDGGNI AAALR
|
|---|
| |