| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2694 |
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| Symbol | dapF |
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| ID | 6462478 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | + |
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| Start bp | 2786297 |
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| End bp | 2787103 |
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| Gene Length | 807 bp |
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| Protein Length | 268 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 642728854 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_002019470 |
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| Protein GI | 194337676 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000359695 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAGATCA CATTCACCAA ACTCTCCGGA GCAGGCAATG ACTTTATTGT TATCGACAAC
AGAGCGCTCG CCATCCATCT TACCCCTTTG CAGATCAATA AACTCTGCAC CAGAAGAACA
GGAATCGGAG CTGATGGGCT GATTCTCATT GAGCCATCAG CAACATTTTC CTTCAGCATG
AAGTACCACA ATGCAGACGG TTTCCTTGGC TCAATGTGCG GAAATGGCGG CCGGTGTGCC
GTCTATTTCG CCTTCACCAT CGGGATTCCG GCAGCTTCCG GCAACGCTTA TACCTTTGAA
GCCAACGGGA ACCGTTACGA TGCATGGGTG CTCGGAGAAG AAAACGTCAA ACTGAAAATG
CTTGCCCCAC AAGGGTTCAA AGAGAATCTT GATCTTGAAG GAGAGCAATG CTTTGCCCTC
AATACCGGAT CACCTCATGC CATTATTTAT ATATCCGATC TTGACGCCGT CGATGTCAAC
AAAAAAGGAA GCGCCATCCG CCACAGAACC GACTTTTTCC CGGATGGAAC CAACGTCAAC
TTTATCGAAA TCACCTCCCC CAACTCTCTT GCTCTTCGTA CCTTTGAGCG CGGCGTCGAA
GAGGAGACCC TTGCCTGCGG AACAGGCGCA GTCGCCGCAG CACTGATGAG CCATAAACTC
GGTAAAATCA GCTCGACCAC CGTACAGGTA ACGGTTAAAA GTGGTGACAC TCTTGAAGTA
GAGTTCAATG AGAGCATGGA CGAGGTTTTC CTTAGCGGAC CGGCAAAAAT CATCTACGAA
GGGAGCTTCA CTATTGAGGG TTTCTGA
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| Protein sequence | MKITFTKLSG AGNDFIVIDN RALAIHLTPL QINKLCTRRT GIGADGLILI EPSATFSFSM
KYHNADGFLG SMCGNGGRCA VYFAFTIGIP AASGNAYTFE ANGNRYDAWV LGEENVKLKM
LAPQGFKENL DLEGEQCFAL NTGSPHAIIY ISDLDAVDVN KKGSAIRHRT DFFPDGTNVN
FIEITSPNSL ALRTFERGVE EETLACGTGA VAAALMSHKL GKISSTTVQV TVKSGDTLEV
EFNESMDEVF LSGPAKIIYE GSFTIEGF
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