| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2687 |
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| Symbol | |
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| ID | 6462462 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | - |
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| Start bp | 2775818 |
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| End bp | 2777884 |
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| Gene Length | 2067 bp |
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| Protein Length | 688 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 642728847 |
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| Product | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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| Protein accession | YP_002019463 |
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| Protein GI | 194337669 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
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| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.059149 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTATCAGT ATCGTCGTCG ATTAACTCGT GAAGTAGTTT TTGGAAATAG AGCATTGGGG
GGCTACCAGC CAATACGGGT AGAGTCCATG ACCAATACCC ATACACTGGA TACTGCAGCA
ACCGTTGAGC AGTGCAGAAG GTTGTATGAT GCCGGTTGCG AAATTATCCG TCTCACCGTT
CCTACCGAGA GAGACGCTGA AAATTTACGG AATATCAGAG ATCAGCTCCG TCGGGATGGA
ATTGATACCC CGCTTGTCGC TGACATCCAT TTTTCCGTGC GTGCAGCGCT CAAGGCGGTT
GAATTTGTTG AAAACATCCG CATCAATCCT GGCAATTATG CCACCAGCCA GAAGTTTTTA
AACAGTGATT ATTCGGAAGA GGAGTATCTG AAAGAGCTTG ATCATGTTCG GCTTGAATTT
GCTCCTCTGG TTGAGAAAGC GCGTCAACTC GGTGTTTCCA TGAGAATTGG CACCAATCAT
GGTTCTTTGT CCGACCGCGT AGTCAGTCGC TACGGCAATT CGGCGGAAGG TATGGTTGAA
GCTGCTCTTG AATTTGCCCG TATCAGTGAA GAGATGGGCT ATTTCGATAT CCTTTTTTCC
ATGAAATCGT CCAATGTCCG CGTCATGATC CAGGCTTATC GCCTGCTTGT CGAAAAAGCA
GATGCCGAGC TTCGCTATGC CTATCCGCTC CATCTTGGGG TAACCGAGGC TGGCGATGGC
GATGAGGGAC GTGTTAAATC GGCGATGGGC ATCGGAGCGC TTCTTGAGGA TGGTCTTGGT
GATACCATAA GGGTCTCTTT GACTGAGGAT CCTGTCAACG AGGTTCCTGT TGGTTTTGCT
CTGGTCAAAA AGTATAACGA CTTCCATCTG GTAAAAGGGG ATAAAGGCTC TCTTCCTCTG
AAACATGTTC TTGAAAGTCA AAACAGGAAG GCATACCAGC CAGCGCTCGA TTCTCAGGAA
CCTCTTCCTT TCAATCCATT CAGCTATCAG CGCCGGGAGT CTCGTCAGAC TCTGCTGGGT
GGCATGGCCA TAGGTGGTGA CAATCTGCCG AGAGTTGAAA CGGAAGCAGT GGCTCCACTT
TCAGAGAGTC AGGCCGTTTT TGAAGAGGTC ATGCAAAGGC TTGCACCAGA AAAGCCTCAG
GATGCTATTC GCTCCGAGTT TGTTTCTGTT CGCGTCAACG ACAAGGCTGA TCTTGAGTCA
CTTGATCGAC TGATCGGCAA GCTTGGCGAT TATGCCCCCT TTTTGGTTGC CTCGACAAAT
GATCTGGCCA TTTTTGCCCA ATTGCTCGAT AAAGTCTCAA AAGTCAGGTT TGATATCGTT
GAAGGGGAGC GGCTTGGAGA AGATTTTTTA CATCTTTTTG ATCATGAGTG CCAGGCAGTC
GTTGAACTCT GCTTTATCCA TGAAACGGCA GGGAACAGAG CGCCTGCAGA GGTGCTTGCC
CATTTCGCAA AAAAGATTCG CAGCCAGGGT GTGCAGCGAC TCATTTTTTC GATTCTCTCA
ACCGATTCTG TTTTTGTGTA TCGTCGTCTT GTGGAGGTAT TTAACCGTTA CGCTCTCGAT
TATCCTCTCA TCGTTCGCTT CAAAAAAGAG TCTTCTGACC GACTTGAAAC GTTGATCGAC
AGTTCAGTAC AGGCAGGAAC TCTATTTTGT GATGGTATTG GAGACATGCT CGCGTTTCAT
ACCAGCCTCT CCTGGGATGA TGAGGTGCAA CTGGCATTCA ACATACTTCA GGGCGCAAGA
GTCAGAATGT CAAAAACGGA ATTTATCTCC TGTCCAGGCT GTGGCAGAAC CTATTTCGAA
CTGGAAAAGG CTACAGCAGC CATTAAACAG AGAACGGTTC ATCTCAAAGG GCTGAAGATT
GGCATCATGG GCTGTATCGT CAACGGTCCT GGTGAGATGG CCGATGCCGA TTTTGGTTAT
GTTGGCGCCG GAAAAAATCG CATCAGCCTC TATGTTGGAA AGGAGTGTGT TGAGGAAAAT
ATTTCGGAAC TTGATGCCGT TGACCGGCTC ATCGATCTTA TCAGAGAGCG TGGGAAATGG
GTTGATCCGC CATGCAGCAT GCCTTGA
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| Protein sequence | MYQYRRRLTR EVVFGNRALG GYQPIRVESM TNTHTLDTAA TVEQCRRLYD AGCEIIRLTV
PTERDAENLR NIRDQLRRDG IDTPLVADIH FSVRAALKAV EFVENIRINP GNYATSQKFL
NSDYSEEEYL KELDHVRLEF APLVEKARQL GVSMRIGTNH GSLSDRVVSR YGNSAEGMVE
AALEFARISE EMGYFDILFS MKSSNVRVMI QAYRLLVEKA DAELRYAYPL HLGVTEAGDG
DEGRVKSAMG IGALLEDGLG DTIRVSLTED PVNEVPVGFA LVKKYNDFHL VKGDKGSLPL
KHVLESQNRK AYQPALDSQE PLPFNPFSYQ RRESRQTLLG GMAIGGDNLP RVETEAVAPL
SESQAVFEEV MQRLAPEKPQ DAIRSEFVSV RVNDKADLES LDRLIGKLGD YAPFLVASTN
DLAIFAQLLD KVSKVRFDIV EGERLGEDFL HLFDHECQAV VELCFIHETA GNRAPAEVLA
HFAKKIRSQG VQRLIFSILS TDSVFVYRRL VEVFNRYALD YPLIVRFKKE SSDRLETLID
SSVQAGTLFC DGIGDMLAFH TSLSWDDEVQ LAFNILQGAR VRMSKTEFIS CPGCGRTYFE
LEKATAAIKQ RTVHLKGLKI GIMGCIVNGP GEMADADFGY VGAGKNRISL YVGKECVEEN
ISELDAVDRL IDLIRERGKW VDPPCSMP
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