| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2682 |
|---|
| Symbol | rplA |
|---|
| ID | 6462258 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 2772559 |
|---|
| End bp | 2773248 |
|---|
| Gene Length | 690 bp |
|---|
| Protein Length | 229 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 642728838 |
|---|
| Product | 50S ribosomal protein L1 |
|---|
| Protein accession | YP_002019458 |
|---|
| Protein GI | 194337664 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0081] Ribosomal protein L1 |
|---|
| TIGRFAM ID | [TIGR01169] ribosomal protein L1, bacterial/chloroplast |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000286692 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGGAA AAAAATACAG AGATGCCGCA TCGAAGATCG AACGCTTTCA TGAGTACGAT
CTGGTGGATG CTGTGGTGAA GGTGAGGGAA ATTACCGAAG TTAAATTTGA TGCGACAGTT
GATATTGCCG TAAAGCTTGG TGTTGATCCT CGACATGCTG ATCAGGTAGT TCGTGGCACG
GTGATGTTGC CGCATGGTAC CGGTAAAACG GTTTCTGTGC TGGTCGTCTG CAAAGAGGCA
AAAGCTGAAG AAGCTCGTGC TGCAGGAGCA GACATGGTAG GTTTTGAGGA GTATATCGAG
AAGATTCAGG AAGGATGGAC CGGTGTTGAT GTTATTATAG CGACTCCTGA TGTTATGGGA
CAACTTGGTA AAGTTGCCAA GATTCTTGGA CCTCGCGGTT TAATGCCAAA CCCGAAGTCG
GGAACCGTGA CGATGGATGT GGCCAAGGCT GTCAAAGAGG TCAAGGCCGG TAAAATCGAG
TTCAGAGTAG ATAAAGCCGG AAATGTACAT GCCCCTGTCG GCAAGGTTTC GTTTCAGCCT
GATCAGTTGG TTGCCAATAT TACCAGCTTC CTCAAGGAGG TTGTTCGTCT CAAGCCATCA
GCAGCCAAGG GTCAGTATGT GCAGGGAATT GCGCTTTCAA GCACGATGTC CCCGAGCGTG
AAGGTTAAAA TGGAAAAATT TGTCGCCTAA
|
|---|
| Protein sequence | MAGKKYRDAA SKIERFHEYD LVDAVVKVRE ITEVKFDATV DIAVKLGVDP RHADQVVRGT
VMLPHGTGKT VSVLVVCKEA KAEEARAAGA DMVGFEEYIE KIQEGWTGVD VIIATPDVMG
QLGKVAKILG PRGLMPNPKS GTVTMDVAKA VKEVKAGKIE FRVDKAGNVH APVGKVSFQP
DQLVANITSF LKEVVRLKPS AAKGQYVQGI ALSSTMSPSV KVKMEKFVA
|
|---|
| |