| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2679 |
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| Symbol | rpoB |
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| ID | 6462119 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | - |
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| Start bp | 2767457 |
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| End bp | 2771368 |
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| Gene Length | 3912 bp |
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| Protein Length | 1303 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 642728835 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_002019455 |
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| Protein GI | 194337661 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.20242 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAAGTGG CTGATGCAAC AACAACACCC TGTATTGACT TTTCAAAAAT CCAAAGTATT
ATAGAGCCCC CCGACCTCTT AAAAGTCCAG TTAGATTCAT TCCATAATTT TATACAGGAT
AGCGTACCTC TCGCCAAAAG AAAAGATCAG GGTCTTGAGA GGGTGCTTCG CGGAGCATTC
CCCATTACTG ATACCCGGGG TCTCTACCTG CTTGAGTATA TTTCATACAG CTTTGATAAA
CCAAAGTATA CCATAGAGGA TTGTATTGAG CGCGGCCTGA CCTACGATGT CTCCCTTAAA
GTCAAGCTAA AACTCTCCTA TAAAGATGAG GCTGATGAGA CAGACTGGAA GGAGACCATA
CAGCAGGAGG TTTACCTTGG CAGGATTCCT TACATGACCA ACCGCGGCAC CTTTATTGTC
AACGGCGCTG AACGTGTTGT GGTCGCTCAG CTTCACCGCT CGCCCGGTGT TGTTTTCAGT
GAGGCAGTCC ATCCGAATGG CAAGAAAATG TATTCGGCAA AAATTGTACC GACCAGAGGT
TCATGGATTG AGTTTCAGAC CGATATCAAT AATCAGATAT TTGTCTATAT CGACCAGAAA
AAAAACTTTC TCGTCAGTGC GCTTTTGCGT GCCATAGGTT TTGCCAGAGA CGAAGATATT
CTCGGACTCT TTGATCTTGT TGAAGAGCTT CCTCTGAAGT CAAGCAAAAA AGAGCAGCTT
GTCGGGCAGT ATCTTGCTTC CGACATTGTT GACATGCAGA CCGGAGAGGT GGTGAGTGCG
AGGACAGCGA TAACGGAGGA TATTTTTGAG CAGATTCTTG CTGCCGGCTA TAAAAGTGTC
AAGGTGATGA AGACCTTTGC AGGCGGCGAC AAGGGCGTAG ACAAATCGAT CATCATCAAT
ACCATTCTCA ATGACAATTC AGCGACCGAA GAAGAGGCGC TTGAGATTGT CTATGAAGAG
TTGAGGGCCA ATGAAGCTCC CGATATTGAT GCTGCAAGGA GTTTTCTGGA GAGAACTTTC
TTTAATCAGA AAAAATATGA TCTCGGAGAG GTTGGCCGTT ACAGGATCAA GAAAAAGCTC
GCTAAAGAAT TTGATGATCT GACTGCCTAT CTCGCTGAAA AGCCTGAGTT GAAGCAGTTG
TCGGATACCA TTTACGAGAA AATTCTCCAG ACGATACAAT CGTTCTCTGA TGAGCCGACA
GGTGAGGATA TTCTGGTGCT GACGCATTAT GATATCATTT CAGTCATCTA TTATCTCATC
AAGCTGGTCA ACGGTCTTGC CGATGTTGAC GATGTCGATC ATCTGGCAAA CCGCCGCGTG
CGTTCGGTCG GAGAACAGCT TGCAGCCCAG TTTGTTATTG GACTGGCCAG GATGGGAAAA
AATGTTCGCG AGAAGCTCAA CTCCAGAGAC TCGGATAAAA TAGCTCCTGC AGACCTGATC
AACGCACGTA CCGTATCGAG CGTTGTATCA AGTTTCTTTG CAACAAGCCA GTTGTCACAG
TTCATGGACC AGACCAATCC TCTGGCTGAA ATGACCAACA AGAGAAGGGT TTCTGCCCTT
GGACCAGGTG GTCTTACCAG AGAGCGGGCA GGTTTTGAGG TTCGTGACGT TCACTATACA
CACTATGGCA GGCTCTGTCC GATTGAAACA CCTGAAGGTC CCAATATCGG TCTGATCTCC
TCGCTTTCAG TCTATGCCGA GATTAACGAT AAAGGTTTTA TCCAGACACC TTATCGTGTG
GTTGATAAAG GTCAGGTGAC GGATACCGTT CTGATGCTTT CGGCTGAAGA TGAAGAAAAC
AAGATAACGG TACCAGTCAG TGTTCCCCTT GACGAAAACC GAAAGATTGC CATGGAGACG
GTTCAGGCCA GGACAAAAGG AGATTATCCG GTTGTTGCGG CTGAGGATGT CAACTATATG
GATGTCTCTC CCGTACAGAT TGTTAGTGCT GCAGCAGCGC TGATTCCCTT CCTTGAGCAC
GATGACGGTA ACCGCGCACT GATGGGTGCA AACATGCAAC GCCAGGCGGT TCCGCTCTTA
ACCTCGGAAG CTCCTGTTGT CGGTACCGGT ATGGAAGCAA AGGTGGCTCG GGATTCCCGT
TCAGTCATTG TTGCCGAAGG GGCCGGAGTG CTCGAAGATG TTACGGCAGA ATATATCCAG
GTGCGTTATG ATCTCAATCC TGACAATGAT GTTCGCCTCT CGATGCTTGA TCCTGATGAA
GGGCTGAAAA CCTATAAATT AATCAAGTTC AAGCGATCCA ACCAGGACAC CTGTATTTCA
CAGAAACCTC TTGTTCACAT TGGTCAGCGT GTCGAAAAAG GAACCGTTCT TGCAGATAGC
TCATCGACCG ATAATGGTGA ACTGGCACTT GGAAAAAACG TTCTGGTCGC CTTCATGCCC
TGGCGTGGCT ATAATTTTGA AGATGCTATC ATTCTCAGTG AAAGGCTGGT CTATGACGAT
GTCTTTACCT CAATCCATAT TCATGAATTC GAGGCCAATG TCCGGGATAC CAAGCGTGGC
GAAGAGCAGT TTACCCGTGA CATCTACAAT GTCAGTGATG AAGCGCTCAG AAACCTTGAC
GAGAATGGTA TTGTGCGCAT CGGTGCGGAA GTCAAGGAGC GGGATATTCT TGTCGGAAAA
ATAACGCCAA AAGGAGAGAG CGATCCAACA CCGGAAGAGA AGCTGCTCAG GGCGATTTTC
GGTGATAAAT CGAGTGATGT CAAGGATGCT TCAATGCATG TGCCAGCCGG AATGAAGGGT
ATTGTTATCA AGACAAAGCT CTTCAGCCGC AAGAAAAAGG TTGGTATGGA TGTAAAGGAA
AAGCTTGAGG TTGTCGACAA GAGATTTGAT TCCAAAGAGT ATGATTTGCG AAAGCGGTTT
GCAAAATGGA TCAAACAGCT TCTTGGAGGC AAAAGCTCGG TTGGTGTATA CAATGATAAA
GGCAAACAGC TCATTGCCGA GGGTTCGGTG TACGATGAAA TCCTTCTTGC GAAGTTCAGC
GCAATGCCTT TCCTCGAGTC CATCGACTTT ACAAAAGGGT TGACCGATTC CAAAAAAGTA
AATGACAATG TCATACGCCT TGTCAAAGAG TTCCGTTTCA TGCTCAAGGA TCTGGCTGAT
GAGCGTGACA ACGAAAAATA TAAAATCAAT GTTGGCGATG AACTTCCTCC AGGAATCGAG
GAGCTGGCCA AAGTCTACAT TGCCCAGAAA AGAAAGATTC AGGTCGGCGA CAAGATGGCC
GGTCGGCACG GAAACAAGGG TGTTGTCGGT AAAATTCTCT CGATTGAGGA TATGCCTTTC
ATGGCTGATG GTACCCCGGT TGACATTGTT CTCAACCCGC TTGGTGTGCC GAGCCGTATG
AATATTGGCC AGCTCTATGA AACATCGCTC GGCTGGGCAG CAAAGAAGCT TGGTGTCAAG
TTCAAGACAC CGATTTTCAA TGGCGCTACC TATGAGGAAG TACAGGCTGA ACTTGAAAGA
GCTGGTCTTC CGGCTCATGG AAAAGTAAGT CTTTTCGATG GTCGTACCGG CGAGCGCTTT
GATGACGAAG TGACAATTGG GTATATTTAC ATGCTCAAAC TCAGTCACCT TGTCGATGAC
AAGATTCATG CCCGTTCCAC TGGCCCATAC TCGCTCATAA CCCAGCAGCC GCTTGGTGGT
AAAGCGCAGT TTGGTGGTCA GAGGTTTGGT GAAATGGAGG TTTGGGCACT TGAAGCTTAT
GGCGCGGCCA ATATCCTTCG GGAGATGCTG ACGGTCAAAT CAGATGATGT GATAGGGCGG
AACAAAACCT ATGAGGCCAT TGTTAAAGGA CAGAACCTGC CAGAGCCAGG AATACCTGAA
TCCTTCAATG TTCTTGTCAG GGAGCTGCAA GGATTAGGTC TTGAGATACG TATTGACGAC
AAGGTTCCTT AG
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| Protein sequence | MKVADATTTP CIDFSKIQSI IEPPDLLKVQ LDSFHNFIQD SVPLAKRKDQ GLERVLRGAF
PITDTRGLYL LEYISYSFDK PKYTIEDCIE RGLTYDVSLK VKLKLSYKDE ADETDWKETI
QQEVYLGRIP YMTNRGTFIV NGAERVVVAQ LHRSPGVVFS EAVHPNGKKM YSAKIVPTRG
SWIEFQTDIN NQIFVYIDQK KNFLVSALLR AIGFARDEDI LGLFDLVEEL PLKSSKKEQL
VGQYLASDIV DMQTGEVVSA RTAITEDIFE QILAAGYKSV KVMKTFAGGD KGVDKSIIIN
TILNDNSATE EEALEIVYEE LRANEAPDID AARSFLERTF FNQKKYDLGE VGRYRIKKKL
AKEFDDLTAY LAEKPELKQL SDTIYEKILQ TIQSFSDEPT GEDILVLTHY DIISVIYYLI
KLVNGLADVD DVDHLANRRV RSVGEQLAAQ FVIGLARMGK NVREKLNSRD SDKIAPADLI
NARTVSSVVS SFFATSQLSQ FMDQTNPLAE MTNKRRVSAL GPGGLTRERA GFEVRDVHYT
HYGRLCPIET PEGPNIGLIS SLSVYAEIND KGFIQTPYRV VDKGQVTDTV LMLSAEDEEN
KITVPVSVPL DENRKIAMET VQARTKGDYP VVAAEDVNYM DVSPVQIVSA AAALIPFLEH
DDGNRALMGA NMQRQAVPLL TSEAPVVGTG MEAKVARDSR SVIVAEGAGV LEDVTAEYIQ
VRYDLNPDND VRLSMLDPDE GLKTYKLIKF KRSNQDTCIS QKPLVHIGQR VEKGTVLADS
SSTDNGELAL GKNVLVAFMP WRGYNFEDAI ILSERLVYDD VFTSIHIHEF EANVRDTKRG
EEQFTRDIYN VSDEALRNLD ENGIVRIGAE VKERDILVGK ITPKGESDPT PEEKLLRAIF
GDKSSDVKDA SMHVPAGMKG IVIKTKLFSR KKKVGMDVKE KLEVVDKRFD SKEYDLRKRF
AKWIKQLLGG KSSVGVYNDK GKQLIAEGSV YDEILLAKFS AMPFLESIDF TKGLTDSKKV
NDNVIRLVKE FRFMLKDLAD ERDNEKYKIN VGDELPPGIE ELAKVYIAQK RKIQVGDKMA
GRHGNKGVVG KILSIEDMPF MADGTPVDIV LNPLGVPSRM NIGQLYETSL GWAAKKLGVK
FKTPIFNGAT YEEVQAELER AGLPAHGKVS LFDGRTGERF DDEVTIGYIY MLKLSHLVDD
KIHARSTGPY SLITQQPLGG KAQFGGQRFG EMEVWALEAY GAANILREML TVKSDDVIGR
NKTYEAIVKG QNLPEPGIPE SFNVLVRELQ GLGLEIRIDD KVP
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