| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2560 |
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| Symbol | |
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| ID | 6461366 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | - |
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| Start bp | 2627446 |
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| End bp | 2628504 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 642728717 |
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| Product | TIM-barrel protein, nifR3 family |
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| Protein accession | YP_002019339 |
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| Protein GI | 194337545 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAATAG GAACCATTGA GATTGACCGG CCGGTTATTC TTGCGCCGAT GGAGGATGTG
ACCGACCGGG CATTCCGCCA ACTCTGCAAG CGTCACGGGG CTGATATAGT TTATACCGAG
TTCATCAGTG CCGAAGCGCT GCGCAGGGGA GTTGAAAAGT CGCTCCGCAA GCTGAAAACA
GATGAGGTTG AGAGACCCTT TGCCATCCAG ATTTTTGGAA GCAGCATCGA GTCGATGGTT
GATGCTGCGG TCATTGCTGA AGGGTATTGC CCGGACTATC TCGACATTAA TTTTGGATGC
CCGACCAAGA AGGTTGCCGG AAAGGGTGCA GGCGCGGCGC TGCTCAGGGA ACCGGAGAAG
ATGACCGCCA TTTCCGAAGC GGTTGTCAAG GCGGTTTCCA TTCCGGTGAC CGTCAAGACA
CGGATTGGTT GGGATCTTGA ATCGATTAAT ATTTTGGATA TTCTGCCACG CCTTGAGGAT
GTTGGTATTC AGGCTCTGGC GTTGCATGGT CGTACGAGGA GTGAGATGTT CAAGGGGAGG
GCGAACCGGG AGTGGATTCG TCAAGTAAAG GAGCAGGCAC GCATTCCGGT TATTGCCAAT
GGCGATATCT GGTCGGCTGA AGATGCTCTT GCCATGTTTG CCGAGACCGG TGCAGATGGA
GTGATGATTG GTCGCGGTTC CATAGGCAAC CCCTTTATCT TTGAGGCCGC AAAAGAGTTG
CTGAAAACCG GCAAGCCGAT GCCGCCGCCC GATTTTCGGG CAAGGATTGA TGTTGCCATA
GAGCATTTGA AGCTCTCCGT GCAGTTCAAA GGCGAAAAAT ATGGGGTTCT GGAAATGCGC
CGCCACTATT CAACTTATCT GAAAGGGCTG CCGATGGTGT CGCGGGTACG CAACAAACTG
GTACGCGAAG ATGGGTGGGA GCAGGTTATC GATATTCTTC TTGCCTACAA GCAGGAGTGC
GAAGGATATG TGATGGAGGG AAAGATTCTT GAGGGCACAG AGTACCTCAA TGACCATTCC
GATAAACTTT TACTGAATTA TCAAGCCAAT AATATATAA
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| Protein sequence | MKIGTIEIDR PVILAPMEDV TDRAFRQLCK RHGADIVYTE FISAEALRRG VEKSLRKLKT
DEVERPFAIQ IFGSSIESMV DAAVIAEGYC PDYLDINFGC PTKKVAGKGA GAALLREPEK
MTAISEAVVK AVSIPVTVKT RIGWDLESIN ILDILPRLED VGIQALALHG RTRSEMFKGR
ANREWIRQVK EQARIPVIAN GDIWSAEDAL AMFAETGADG VMIGRGSIGN PFIFEAAKEL
LKTGKPMPPP DFRARIDVAI EHLKLSVQFK GEKYGVLEMR RHYSTYLKGL PMVSRVRNKL
VREDGWEQVI DILLAYKQEC EGYVMEGKIL EGTEYLNDHS DKLLLNYQAN NI
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