| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2554 |
|---|
| Symbol | |
|---|
| ID | 6463713 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | + |
|---|
| Start bp | 2621798 |
|---|
| End bp | 2622895 |
|---|
| Gene Length | 1098 bp |
|---|
| Protein Length | 365 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642728711 |
|---|
| Product | alanine racemase |
|---|
| Protein accession | YP_002019333 |
|---|
| Protein GI | 194337539 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0787] Alanine racemase |
|---|
| TIGRFAM ID | [TIGR00492] alanine racemase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGAAG CGCTTGTCTC CCTTGACAAC CTTGCCTGGA ACACAAGCCT TATCCGCAAG
AGAGTGGGTG GAAGTGCACG TATTATGGGC ATCGTCAAGG CAAATGCCTA CGGCCATAAC
GTGCACCGGG TTGCCGAAAC ACTTGAAAAA TCGGGAGTCA GGGATTTCGG TGTTGCGAAC
ATCCATGAAG CCATTGAACT GAAAACCGGC GGTGCACTGA AAAAGCCGGC AAACATTCTC
GCCTTCTCCT CTCCGCTTCC CTCCCATATT CCCTTTTTTT TGCACCATGA CATCGAAATG
ACTCTCTGCG ACAGCCTGAC ACTTCAGAGT GCAGAAGAGA TTGCGGCTGC AGAGAACAAA
ACCATTGCCG TACAGCTCAA AGTGGATACC GGTATGGGCC GACTCGGCAC TCCTCCGGCA
GTTGCCATGG AACTCCTCCG GCAAATTGAC CACTCGCCGC ACCTTGAGCT GAAAGGGATC
TACACCCATT TTGCCGACAG CTCTACAGCC GAAGGCACAA CCAAACAGCT TGACGCCTTT
AAAACACTCA CGGCGGAATA CGAACATGCC TCAAGCAAAA CCGTCTGCAA ACATGCGGCC
AACAGCGGTG CAATCCTCTC TGCGCCAGAA TCCTGGCTCG ACATGGTGCG ACCCGGCATC
CTGCTTTATG GTTACCATCC GACCAAAAAC AGCCCTTGCC GTCTCGATGT CAGACCGGTC
ATGCAGTTCG AGGCTAAGGT GATTTTTGTC AAAAAGGTCC CTGCCGGAAC CACCATCAGT
TATAATCGAA CCTGGACTGC CAATGAGCCT CGCTCCATCG CAACCATAGC CGCAGGCTAC
GCCGATGGTT ATACAAGAGC CCTGTCAGGT CGCGCCACCG TCATGATCAA CGGGAACACC
TACCCGCAGG TCGGCATCGT CACCATGGAT CAGATCATGG TTGACCTCGG CACCCGGCAC
GATGTCAAAA CTGGAGACAC CGCCACGCTC TTTGGCTGGG AGGGCATCGG GGCCGACAGC
CTTGCCGGGC TTGCAGGTAC CATCAGCTAC GAAATGCTCT GTTCGGTTTC TGCCAGGGTA
AAACGTATCT TCATATGA
|
|---|
| Protein sequence | MTEALVSLDN LAWNTSLIRK RVGGSARIMG IVKANAYGHN VHRVAETLEK SGVRDFGVAN
IHEAIELKTG GALKKPANIL AFSSPLPSHI PFFLHHDIEM TLCDSLTLQS AEEIAAAENK
TIAVQLKVDT GMGRLGTPPA VAMELLRQID HSPHLELKGI YTHFADSSTA EGTTKQLDAF
KTLTAEYEHA SSKTVCKHAA NSGAILSAPE SWLDMVRPGI LLYGYHPTKN SPCRLDVRPV
MQFEAKVIFV KKVPAGTTIS YNRTWTANEP RSIATIAAGY ADGYTRALSG RATVMINGNT
YPQVGIVTMD QIMVDLGTRH DVKTGDTATL FGWEGIGADS LAGLAGTISY EMLCSVSARV
KRIFI
|
|---|
| |