| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2463 |
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| Symbol | metH |
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| ID | 6461048 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | + |
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| Start bp | 2551027 |
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| End bp | 2554749 |
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| Gene Length | 3723 bp |
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| Protein Length | 1240 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 642728642 |
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| Product | B12-dependent methionine synthase |
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| Protein accession | YP_002019264 |
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| Protein GI | 194337470 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0646] Methionine synthase I (cobalamin-dependent), methyltransferase domain
[COG1410] Methionine synthase I, cobalamin-binding domain |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGGACA CACTACTCAA CAGCCTCGAA GAGCGCATTC TTGTGCTCGA CGGTGCGATG
GGCACCATGA TTCAGCGCCA TAAGCTGAAG GAGGCTGATT ACCGGGGTAC CCGGTTTGCC
AACCACTCGC ATCCGCTTAT CGGGAACAAT GATATTCTGG TGCTGACCCG CCCGGATATC
ATCTATGCGC TCCACTGCGA TTTTCTTGAA GCGGGTTCTG ATATTATCGA AACCAATACC
TTCAATGCCA ACCCGATCTC ACAGGCGGAC TATAGCGCCT CTGATCTGGT GAAGGAGCTG
AATGTTGAGG CTGCCCGACT TGCAAGGAGG GCGGCGGATG AGTATACGGC CCGCAACCCT
GATAAACCGC GTTTTGTTGC CGGTTCAATC GGCCCGACCA ACAAGACGCT TTCGCTCTCT
CCGGATGTGA ATAATCCCGG CTTCCGGGCC GTCACCTTCC AGGAGGTTGT TGATAACTAC
ACTCTGCAGC TTGAGGGGCT TATGGAGGGT GGCGTTGACC TGCTGCTGGT TGAAACGGTC
TTCGATACCC TGAACTGCAA GGCTGCGCTC TTTTCGATTG AGGAGTTTTT CAACCGTACC
GGTGTGCGCA TACCGGTCAT GGTATCGGGA ACGGTTGTGG ACGCCAGTGG CCGCACCCTC
TCCGGCCAGA CTACGGAGGC TTTCTGGATC TCTATCGCCC ACATGCCTGA CCTGCTCTCT
ATCGGGCTCA ATTGTGCGCT TGGTTCGAAA CAGATGCGCC CCTTCATTGA GGCGCTTGCC
GGAATTGCCG AGAGCTATGT GAGCGTCTAT CCCAATGCCG GCCTGCCGAA CGAGTTTGGG
GAGTATGATG ACTCTCCGGA ATATATGGCC GGGCAGATTG CCGGTTTTGC CACCTCCGGC
TTTGTCAATA TTGTTGGCGG CTGCTGTGGA ACAACTCCGC AGCATATCAA GGCTATTGCC
GAGGCGGTCG AAAAGCTGCA ACCGCGCAGG CGTCCGGTTA AAAAGCATGA GCTGCAGCTC
TCCGGACTTG AGCCGCTCTT TGTTAACCGC ACAACGGGCT TCATCAATGT CGGTGAACGC
ACCAATGTGA CTGGATCGAA AAAATTTTCC CGCCTTATCA AGGAGAGCAA GTATGATGAA
GCGCTCTCGA TTGCCCGCCA GCAGGTGGAG AGTGGCGCCC AGGTTATTGA TGTCAATGTG
GATGAGGGGA TGCTCGACTC CGAGGTTGTG ATGAGGGAGT TTCTCAACCT GATCGGTTCT
GAGCCGGAAA TTTCACGCGT GCCGGTGATG ATCGACAGTT CGAAATGGTC AGTTATCGAG
AGTGGTCTGC GCTGCGTTCA GGGAAAGAGC ATTGTGAACT CCATCAGCCT CAAGGAGGGT
GAAGCTCTCT TTATCGAGAG GGCCCGCAAG GTGTTGCAGT ATGGCGCCGC CACGGTGGTG
ATGGCCTTCG ACGAGGAGGG ACAGGCGGAC AGTTATCAGC GTCGCATCGA GATCTGCAAA
CGCGCCTACG ATATCCTGAC CCAGCAGGTC GGCTTCCCTC CCGAGGATAT TATTTTCGAT
CCCAACGTGC TGACGGTGGC TACGGGTATT GACGAGCACA ATAATTACGC AGTTGATTTT
ATCGAGACGG TACGATGGAT CAAGGAGAAT CTGCCCCATG CGAAGGTTTC GGGTGGTATC
AGCAATGTCT CCTTCTCCTT CCGGGGCAAT GAAACCGTAC GGGAGGCGAT GCACGCCGCA
TTCCTCTACC ATGCTATTCA GGCGGGGCTC GACATGGGGA TCGTCAACGC CGGCCAGCTT
GCCATCTATG AGGATATTGA GCCTGAGCTG CTGCTTCGGG TTGAGGATGT GCTGCTGAAC
CGCCGGGCGG ATGCTACGGA ACGGCTTGTC AGCTTTGCTG AAACCATTCA GAGTGGCGGT
GAAAAAATCG AGGCAAAGGC GGCTGAATGG CGGAGCCTGC CGGTTGAAGA GCGGCTGCGC
CATGCATTGA TCAAGGGAAT TGTTGAGCAT ATTGAAGAGG ATACCGAAGA GGCCCGCCAG
CTCTACCCGA GTCCGCTCCA GGTGATTGAG GGGCCGCTGA TGAACGGGAT GAACGCCATC
GGCGACCTTT TTGCCGAGGG GAAGATGTTT CTGCCGCAGG TGGTCAAGAG CGCCCGCGTC
ATGAAGCGTT CGGTTGCCGT GCTTCTGCCC TACATTGCAG CGGAGAAGGC GCTGAACAAG
GATACCCGTG CGGCGGCCAA GGTGCTGCTT GCAACGGTGA AGGGTGACGT GCATGATATC
GGCAAGAATA TTGTGGCTGT TGTGCTCGCC TGCAATAATT ATGATGTTGT CGATATCGGC
GTCATGATGC CGTGCGACAA GATTCTTGAA GCGGTGGAGC GTGAAAAGGC TGATCTGCTT
GGTTTGAGCG GCCTCATCAC CCCTTCGCTG GATGAGATGG TGCATGTTGC CAGCGAGATG
GAGCGGCTTG GCATGACAAT CCCGCTCCTT ATCGGTGGCG CCACCACATC GAGGATGCAT
ACGGCCGTGA AAATTGCTCC GGTCTATTCG GGCGCGGTTG TTCAGGTGCT CGATGCTTCC
CGGAGTGTTC CGGTAGTCAA CAGTCTGCTC AATCCGGCGC TCAGCCCCGA CTACATTGCC
GGGCTCAAGG CGGAGCAGGC CGGACTGCGG GAGAGCCATG CGTCACGCGC TGCCGGTAAA
AAATATCTCA CGCTTCAGGA GGCACGCAAC AACCGCCTGG CACTTCAGGG CAGCATCTGC
AAGCCGCTGC AACCGGGAAT TACCCTGTTT GAACATGTTA CCGCAGGAGA GCTTCGCCCC
TATATCGACT GGACTCCCTT TTTCATGACC TGGGAGCTGC ATGGCCGCTA CCCGCAGATT
CTTGACGACC CAAAGTACGG CAGCGAAGCA AAAAAGCTCT TTGATGACGC CAACAGCCTG
CTCGACCGGA TTGAACAGGA GCAACTGCTT GGCCTGAAAG GTGTTGCCGG ACTCTTCCCT
GCCAACAGCT CGGGGGATGA TATTGAGGTC TACTCAGACG AGAGCCGCAC CAGCCTGCTT
GCGATACTGC ACACGCTCCG CCAGCAGCAG GAGAAGGGTG AGCCGAATCT GGCGCTGGCG
GACTTTATCG CCCCTGTTGG CTCGGGACTG GAAGATTACA TCGGGGCGTT TGCCGTCACT
GCCGGGCTCG GTATTGAAAA GGGACTCAGG GAGTTCAGCG ATCAGCAGGA CGACTACCAC
CGCATCATGA TGCAGGCGCT TGCCGACCGT CTGGCTGAGG CCTTTGCGGA GATGCTGCAC
GAGCGTGTTC GCCGTGAGCT TTGGGGCTAT GAGTGCGCTG AAAAGAGAGA TGGCGACAAA
GGATGTGCCT GTCATCCCGC CCCCCAGTGC CAGCCACACC CGATCCATGA GCTGCTTGCC
GAGAAGTACC AGGGCATCCG CCCCGCTCCG GGCTATCCTG CCTGCCCGGA TCACACGGAG
AAGGCGGAGC TGTTCACCCT GTTGAATGCC GAAACCAATA CAGGCATCAC GCTCACGGAA
ACCTTCGCCA TGAAACCGGC AGCTTCGGTC TGCGGCCTCT ACTTTGCCCA CCCGCAGGCA
AAGTATTTCA TGCTCGGGAA AATCGGGCGG GATCAGGTTG AGGAGTACGC GGAGCGCAAG
GGAATGAGCA TCAAGGAAAC GGAAAAGTGG CTTGCCCCTG CCTTGAATTA CGATCCGGAA
TAA
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| Protein sequence | MKDTLLNSLE ERILVLDGAM GTMIQRHKLK EADYRGTRFA NHSHPLIGNN DILVLTRPDI
IYALHCDFLE AGSDIIETNT FNANPISQAD YSASDLVKEL NVEAARLARR AADEYTARNP
DKPRFVAGSI GPTNKTLSLS PDVNNPGFRA VTFQEVVDNY TLQLEGLMEG GVDLLLVETV
FDTLNCKAAL FSIEEFFNRT GVRIPVMVSG TVVDASGRTL SGQTTEAFWI SIAHMPDLLS
IGLNCALGSK QMRPFIEALA GIAESYVSVY PNAGLPNEFG EYDDSPEYMA GQIAGFATSG
FVNIVGGCCG TTPQHIKAIA EAVEKLQPRR RPVKKHELQL SGLEPLFVNR TTGFINVGER
TNVTGSKKFS RLIKESKYDE ALSIARQQVE SGAQVIDVNV DEGMLDSEVV MREFLNLIGS
EPEISRVPVM IDSSKWSVIE SGLRCVQGKS IVNSISLKEG EALFIERARK VLQYGAATVV
MAFDEEGQAD SYQRRIEICK RAYDILTQQV GFPPEDIIFD PNVLTVATGI DEHNNYAVDF
IETVRWIKEN LPHAKVSGGI SNVSFSFRGN ETVREAMHAA FLYHAIQAGL DMGIVNAGQL
AIYEDIEPEL LLRVEDVLLN RRADATERLV SFAETIQSGG EKIEAKAAEW RSLPVEERLR
HALIKGIVEH IEEDTEEARQ LYPSPLQVIE GPLMNGMNAI GDLFAEGKMF LPQVVKSARV
MKRSVAVLLP YIAAEKALNK DTRAAAKVLL ATVKGDVHDI GKNIVAVVLA CNNYDVVDIG
VMMPCDKILE AVEREKADLL GLSGLITPSL DEMVHVASEM ERLGMTIPLL IGGATTSRMH
TAVKIAPVYS GAVVQVLDAS RSVPVVNSLL NPALSPDYIA GLKAEQAGLR ESHASRAAGK
KYLTLQEARN NRLALQGSIC KPLQPGITLF EHVTAGELRP YIDWTPFFMT WELHGRYPQI
LDDPKYGSEA KKLFDDANSL LDRIEQEQLL GLKGVAGLFP ANSSGDDIEV YSDESRTSLL
AILHTLRQQQ EKGEPNLALA DFIAPVGSGL EDYIGAFAVT AGLGIEKGLR EFSDQQDDYH
RIMMQALADR LAEAFAEMLH ERVRRELWGY ECAEKRDGDK GCACHPAPQC QPHPIHELLA
EKYQGIRPAP GYPACPDHTE KAELFTLLNA ETNTGITLTE TFAMKPAASV CGLYFAHPQA
KYFMLGKIGR DQVEEYAERK GMSIKETEKW LAPALNYDPE
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