| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2459 |
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| Symbol | |
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| ID | 6461403 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | + |
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| Start bp | 2541825 |
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| End bp | 2544008 |
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| Gene Length | 2184 bp |
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| Protein Length | 727 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 642728638 |
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| Product | CRISPR-associated protein Cas1 |
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| Protein accession | YP_002019260 |
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| Protein GI | 194337466 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1518] Uncharacterized protein predicted to be involved in DNA repair
[COG3344] Retron-type reverse transcriptase |
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| TIGRFAM ID | [TIGR00287] CRISPR-associated endonuclease Cas1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.670262 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGATGGC TTTACAATCA GATGGCTTTG CCTGAAACAC TTTTTCAGGC CTGGAACAAG
GTGGTTTCGA ACGACGGAAT GGCCGGGTAC GACAAACAGT CAATTACCGA TTATTCGTGG
CGCATCGAGG AGCATCTTGC CGATCTTGGC AGGCAGCTCT TGACCAACAC CTATGAGCCG
CAGCCGCTCC TGAAACTCGT CATGCTGAAA CCCACCGGAA AGTTGCGCAC CCTCCTGATT
CCTACGGTGA TGGAGCGGGT TGCGCAAACC GCAGCGGCGA TCGTGCTGAC CCCTCTGGTG
GAGTCGGAAC TGGGAGCCAA TACCTTCGCC TACCGGCCGG GGTTGTCGCG CATGACGGCG
GCCCGTGAAA TCGAGAGGCT GCGAAACCTT GGTTATAACT GGGTGGTCGA TGCCGATATC
AGCAGCTTTT TCGATACCGT TGACCACCCG TTACTCTTTC AGCGCTTTCG TGAACTCTGT
GATGACGAGG AGCTGCTCAC GCTGATTGCG CGATGGCTGA CCGCAGAAAT TGTTGATGGC
CAGAACCCAA AGGTGAAGAA CACCATCGGC CTGCCGCAGG GCTGCCCCAT TTCGCCGATG
CTTGCAAACC TCTATCTGGA TAAATTTGAT GAGCGCATGG AGCAGGAGGG GTTCAAACTG
GTGCGCTTTG CCGATGATTT TCTCATTCTT TGCAAGTCAA AACCAAAAGC AGAAGCGGCC
CTCCAGCTTT CGGAAAGTGC GCTGGCGGAG CTGAAACTGC AACTCAACAA CGAAAAGACC
CGGATCACCA CCTTTGCGGA GGGGTTCAAA TACCTTGGCT ACCTCTTCAT CCGTTCGCTG
GTGTTGCCCA CCAAAATGCA CCCGGATGAG TGGTACGACA AACTGGGCAA GCTGAAACTC
CGCAAAGCTC CGAAAAGCCT GCTGCACCCT GAGGAAAGTG ATGATGAGGA GTACGAACTG
CAAACCGGTG ACTCCGACGC CATAACGGTG ACCAAAGAGA CGCTGCTTCA GACCGAGTTT
GGTGAAAAGC TGCTGCAAAG CCTTGAAAAA CAGCAGATTG ATGTAGACAA ATTCCTTGAG
AAAACGGCCA AAGAGGATGC CCTGCGGCAA AAAGAGAAGC ACGAAGCGCT CAACAAACTC
TACTCCCCGC TGCTCAATAC CCTCTACCTG CAGGAACAGG GCAGCATATT GCGTAAGGAT
GGTGAACGGT TCAGCGTTGA AAAAGAGGGC AAGCAACTCA ACGACATCAT TGTCCGCCGG
GTAGAGCAGA TTCTGGTGCT CGGCAACATC ACGCTCACCA CACCGGCTAT GCAATACTGC
ATGAAAAGCA ACATTCCCAT CACCTTTGTT TCGCAACATG GCAGCTACTT TGGTCGGCTC
GAAGCCACCA CAGCCGACAA CTCCGCGCTC GAACGCTTTC AGTACCTCCG CTCACTCGAT
GAACCCTTTG CCCTCGGAAT TGCCAGCGCT ATTGTAGAGG CAAAAATCAG AAACTCGCGC
ACCATGATCC AGAAACGCAA AGCCATGGCG TGGGAAAGTA ACGGAGAGCT GAAAGAAAAA
TTCGATGCGT CCCTCTTGCT GATGACCTCG CTTGCCGAAC ATACCAAAAG CTGTGACAAT
ATGGAGGCGC TCCGGGGGAT CGAAGGCAAA GCCGCCGCAC TCTACTTTGA ACTCTTCGGC
CTCCTCTTCA AAAAAGAGCT TCCCTTTTAT ACCAGTGCAT TCCGCAGGGT GCGGCGTCCG
CCAACCGACC CGGTCAACAG CCTGCTCAGT TTCGGCTATA CCCTGCTGCA CAACAACATC
TTCTCCCTCG TGCGCATGAA GGGAATGAAC CCCTACCTCG GCTTTCTGCA CGCCGAAGAC
AAAGGCAACC CGGCGCTGAT CAACGACCTC GTCGAAGAGT TCAGAACCAT TATCGACTCC
ATGACGCTCT ACACCCTCAA CAAGGGAGTT TTGCGGAACA AGGATTTTTA TTATCGTAAG
GACAAGGCGG GATGCTTTCT CACTGATGAG GCCCGGAAAA AGTTTCTGGA ACTCTTTGAA
CAGCGAATGT GGGCAGAGTC GCTCGACCCG CAAAGTGGCA AAAGCCTGAA TATCCGGCGG
CATATTGAGT CGCAGGTGGT CAAAATCAGC GAAGTGCTTG CCGGGACGAG GGCTGTTTAT
GAACCCTGGC GGTCAGAATG GTAA
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| Protein sequence | MGWLYNQMAL PETLFQAWNK VVSNDGMAGY DKQSITDYSW RIEEHLADLG RQLLTNTYEP
QPLLKLVMLK PTGKLRTLLI PTVMERVAQT AAAIVLTPLV ESELGANTFA YRPGLSRMTA
AREIERLRNL GYNWVVDADI SSFFDTVDHP LLFQRFRELC DDEELLTLIA RWLTAEIVDG
QNPKVKNTIG LPQGCPISPM LANLYLDKFD ERMEQEGFKL VRFADDFLIL CKSKPKAEAA
LQLSESALAE LKLQLNNEKT RITTFAEGFK YLGYLFIRSL VLPTKMHPDE WYDKLGKLKL
RKAPKSLLHP EESDDEEYEL QTGDSDAITV TKETLLQTEF GEKLLQSLEK QQIDVDKFLE
KTAKEDALRQ KEKHEALNKL YSPLLNTLYL QEQGSILRKD GERFSVEKEG KQLNDIIVRR
VEQILVLGNI TLTTPAMQYC MKSNIPITFV SQHGSYFGRL EATTADNSAL ERFQYLRSLD
EPFALGIASA IVEAKIRNSR TMIQKRKAMA WESNGELKEK FDASLLLMTS LAEHTKSCDN
MEALRGIEGK AAALYFELFG LLFKKELPFY TSAFRRVRRP PTDPVNSLLS FGYTLLHNNI
FSLVRMKGMN PYLGFLHAED KGNPALINDL VEEFRTIIDS MTLYTLNKGV LRNKDFYYRK
DKAGCFLTDE ARKKFLELFE QRMWAESLDP QSGKSLNIRR HIESQVVKIS EVLAGTRAVY
EPWRSEW
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