Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ppha_2454 |
Symbol | |
ID | 6461195 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelodictyon phaeoclathratiforme BU-1 |
Kingdom | Bacteria |
Replicon accession | NC_011060 |
Strand | - |
Start bp | 2537649 |
End bp | 2539934 |
Gene Length | 2286 bp |
Protein Length | 761 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 642728634 |
Product | CRISPR-associated protein, Csm1 family |
Protein accession | YP_002019256 |
Protein GI | 194337462 |
COG category | [R] General function prediction only |
COG ID | [COG1353] Predicted hydrolase of the HD superfamily (permuted catalytic motifs) |
TIGRFAM ID | [TIGR02578] CRISPR-associated protein, Csm1 family |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.442356 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTGCCAA CTGGACACAA TATTGTAGAA CTTGGAATAA AGCTTCTCAA AGAAAAAAAG ATTGCTATCA GTGCATTTGC AGAAGCATTT TCACTTGCAG GCGTTACAGC GACGGAGTTG AAACTCGCTC CGCTGAAATC CGTCTTTGGT GGGGATAGAT ATTTTGAGCC AAAAGAGCTT TCTGCTTTTG ATATCAATTA TCCCACACTT GATTCTATTG ACTATTTCAA TAATGTAACG TTAGATGTTA TCGGAAATTG TCTTGCTTCA CTTGAACGGT TCGGATCCTT TGTCGCAACC GATATCGACA ATACTATCCC TGTCTATGAT CTTTTTAAGA CCGCAGCAGC TATTCAAAAT TGCTTAAACA ATGAACTAAA GGATAATCCA TTTCTGCTTG TAAGTGCCGA TTTTTCCGGC ATTCAGGATA CAGTATACAC CATTTCCTCA AAAGGAGCAC TCAAGACACT TCGAGCTCGT TCCTTCATGC TTGAGTTGCT CACAGAACAC ATAGTGTATG AGATTTTACA TGCATGTGGT TCAGAGCGGT ATGCTATTAT CTACTCTGGT GGGGGCGGCT TTAGCCTGTT ACTGCCGAAC ATAGCCGGAA ATGTAAAAGC TATTGATGGC TATAGAGAGG TACTTAATAA ATGGGCTTTA CAGGAATTTT CAGGGAAGTT TTTTATTGCA ATGGATGCAT TGGTATTCAA CGAAGAGAAG CTGAAAGACA AAGGGATTTT TAAAAAGTTA AGACAAGAAC AATCTGATAA TTTAGATAGG CAGAAATCTC GGAAATTTTT ACGCCAACTT GATAAGCTTT TCAAACCTGA GATGCCAGAG CAAGTTAACT TGCAGACTGA GTGCCAGATT ACCAGACGGG ACGATTTGCC AAATAAAGAA ATGCGTGATT TAGGAAGTGG CGAAAAAATG CCGGAGCATA ATCCCGATAT GACAAAAACC TGGGTTTCAG AAAGCTGTTA CAGGCAATAT CGTTTGGGTG ACAAGCTAAT TGGTACAAAG TATGTCTGTC GGAGAAAAAT AGCAAAGGAC GATAGAAGCG GGTTTGTTCA GCTTCCGACT ATGAAATCGA CACCAACGAA GCTCTCATTT TGTTATTATG TTGTCAGTTC GAAGTTGATT CACAATTCAG ATGCAATTTG GTGCATCAAT TCTTGGACAG AACGAGAGAG TTCGAGAACC TTACTGTACT CTAATTATGT CCGAAAGTAT GGTGATCTTA CTGCCTATAC TAAAAAGTTA GGAAATGAAT CGCATACAAA TGTTGAAGAA AGACAAGCCA AGGATACTGA TACAGCGACG TTTGAGGGTT TAGCTGCAAG TTCCTGCGGT GCAGATCTGA TTGGTGCATT GCGAATGGAT GTCGATAACA TGGGTGACTT GTTTCGCAAT ATTGAAAGCT TTGCCGCGCT TTCAACAAAA TCAAGAATGC TGAACCTCTT TTTTAAGGTG TACCTCAATC AAATATGCGC AGGACATTTA GGCAGCAGAC TTTCTCCAAC TGACATTGTC GGGAAAAATT ACACGGAAAA GAATGCAGCC GAAGAAAATA AAGGACGCAA TGTCTCAGTG ATTTACGCAG GAGGTGACGA TCTATTTATT CTCGGTGCAT GGGATGAAAC AACGGAACTT GCCTTCGATA TTCAACGCTG CTTTGCCTTA TTCACAGGTG GAATGTTTGA TACAACTAAA AAGATCATTA GCGGAGGACA AGGAATATCC GGCGGTCTCA CTCTGCACCA GCCAAAATTC CCACTTTACC AAATGGCAAT AAAATCAGGT GAGGCAGAAA GTGTTGCAAA ACATGCAAAA GTGCAAAAAA ACTGCTTCAC ACCTTTTTTG CTTGCCTTAG ATCATGTTGA TAAGGGTTAT GAATTTTATA ACAACCAAAC AGTTCGAATC ATTGACTGGA ACGATCCAAC TTTTTTTGGA TTACTTGAAA ACTTAGTAGT ATTAACGGAG AAGCATATAA CCGGCAATCA GATTGATACC ATCAAACTCG AAGCTGTTTC AAAAGGATTT ATTTACAAGC TGTTTGAAGT AGCAAGAGTT TGGGTCGCTG AAGGGACTTT ATACTTGCCT CGCTTGCGTT ACATATTTTC ACGTTTAGAA AAACAATATA TAGATAACAA AGATACTCAC AAGCAAGCAG GTATTCAAAG CTTGCGAAGT ATTTTGTTTT CATCAATTAA GCATGAAAGA GAAAAATCTA TTAAGCGTAT GACATTGACG CTTAACTGGT TTGAACAACT TCAACGCAAT AAGTAA
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Protein sequence | MVPTGHNIVE LGIKLLKEKK IAISAFAEAF SLAGVTATEL KLAPLKSVFG GDRYFEPKEL SAFDINYPTL DSIDYFNNVT LDVIGNCLAS LERFGSFVAT DIDNTIPVYD LFKTAAAIQN CLNNELKDNP FLLVSADFSG IQDTVYTISS KGALKTLRAR SFMLELLTEH IVYEILHACG SERYAIIYSG GGGFSLLLPN IAGNVKAIDG YREVLNKWAL QEFSGKFFIA MDALVFNEEK LKDKGIFKKL RQEQSDNLDR QKSRKFLRQL DKLFKPEMPE QVNLQTECQI TRRDDLPNKE MRDLGSGEKM PEHNPDMTKT WVSESCYRQY RLGDKLIGTK YVCRRKIAKD DRSGFVQLPT MKSTPTKLSF CYYVVSSKLI HNSDAIWCIN SWTERESSRT LLYSNYVRKY GDLTAYTKKL GNESHTNVEE RQAKDTDTAT FEGLAASSCG ADLIGALRMD VDNMGDLFRN IESFAALSTK SRMLNLFFKV YLNQICAGHL GSRLSPTDIV GKNYTEKNAA EENKGRNVSV IYAGGDDLFI LGAWDETTEL AFDIQRCFAL FTGGMFDTTK KIISGGQGIS GGLTLHQPKF PLYQMAIKSG EAESVAKHAK VQKNCFTPFL LALDHVDKGY EFYNNQTVRI IDWNDPTFFG LLENLVVLTE KHITGNQIDT IKLEAVSKGF IYKLFEVARV WVAEGTLYLP RLRYIFSRLE KQYIDNKDTH KQAGIQSLRS ILFSSIKHER EKSIKRMTLT LNWFEQLQRN K
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