Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ppha_2427 |
Symbol | |
ID | 6461202 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelodictyon phaeoclathratiforme BU-1 |
Kingdom | Bacteria |
Replicon accession | NC_011060 |
Strand | - |
Start bp | 2510027 |
End bp | 2513161 |
Gene Length | 3135 bp |
Protein Length | 1044 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 642728610 |
Product | putative signal transduction protein with Nacht domain |
Protein accession | YP_002019232 |
Protein GI | 194337438 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5635] Predicted NTPase (NACHT family) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.509479 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCGCTTG ATTATAAGGG AGTTATGGTT TCGAGCACCT TCACCGACCT GAAGGAGCAT CGTGCTGCGC TGATCAACAT TATCGATGGC GCGGGGTTTA AAGCTGTGGT GATGGAGCAT GATTCAGCCA AGTCTGGCGT GGATGTGATC GACTCTTCGC TACAGATGGT TCGGGATAGT GCCGTCTATA TTGGAATCAT CGCAAAGAAG CTTGGCCAGA TGCCAAAATG TCCCACTCGT AATCCTCGTA GTGTTTCAAT CACTGAACTG GAATTCAACG AAGCGGTACG TCTCGGTCGG CCCATTCTGT TGTTCCTCAT GGGGAATGAG CACAAAGTCA TTGAGTCCGA GTTTGAACTC AAAGCCTTGA ATCGCAAGAA GCTGAACGCC TTCCGTGAGA GGGCAAAGAA TATGGGGCCG GATTCGAAAG TGCATCGTGT TTATGCCGAG TTCAACAGCC TTGAGGAGTT CAGGGAAAAG GCGGCCAAAG CGCTCTCCGA TCTGCGCCTT GCTTTTCATG CAACCCCATC GGCACCTGAA GCAGGCAAGG AAACTTCTCA ATCCGTTGAC AAAAAACATG AAGAGTGCGC AGAGTGTTAC CAGACTATCC TTAAAGAGGA GTTGGGTTAC ATTCGTATGC TTGGGCTTCC GGGTGTTGAG AGCATCAAGG TCAACCTGAA CAACGACACC TTTGTGCCCT TGCGACTCTC CGACAGTTAT GCAAGAGGTG GGCTTTTTTC AAAAGAGAGC GAGTTGCAGG GAGGTGAACA TATTCTCTAT CCTGACGAGA TCATGAAGCA GGCCTTCCAC GACCGGAGAG GTCGCCGGAT GCTGCTCGTT ATCGGTGACC CTGGTGCTGG CAAAACAACG CTTCTCAAGT ATTATGCCCT TTGTGCGCTT GAGGATTTCG CGAAGCTTGG ATTCAGCGCT CCACTCAATG TATTCTACCT GCCCTTGCGT GATCTTGTCC GCGACAAGGA GGGTCGTTGC ACTGAAAATC TGCCAGCAAC CCTTGCTGCC TGGTCAGAAA AGCATCACCA ATCCATTGAT GCAAAGGTTT TCAATGACTG GCTGAACCAC GGCAGCTCGC TGGTGTTGCT TGACGGTCTT GATGAAATCA GCAACATCGA AGAGCGAAAA GAGGTGTGCC GGTGGATTGA CAACGCCTTC AGCGGCTTCA GCAAGGCCTG GTTTGTGGTG ACATCACGGG CGACAGGGTA CCGCAAAGAT GAGGGTATTG AGCTTGCCTC AGATTATGAA CGTGCCGATG TACAGGACTT TACCCCGGAG CAGCAGGAGC GGTTTTTACG AAACTGGTTC ACGGCTGCAT TTCTGAAAGA GCCTTGTGAA AAAGGAGTTC ACGAGGAGTT GTGGCAGGAG AAACAAAAAA AGGAGGCCGA AAAACGCACC ACCACCATTG TTGCGCATCT CAAGGTCGAG AAGAACAAGG GGCTGCGCCA ACTGGCCGCC ATACCCATGA TTCTGCAGAT CATGGCTATT TTGTGGAAGG AGAGGGAGTA CATGCCGGAA AGCCGTGTTG AACTCTACGA TGCAGCGCTC AACTATCTGC TTGAATTCCG CGACAAACGC CGGGATATTA AACCGCTGCT CTCGGCAACT CATGCCCGGC AGGTGCTTGG GCCGGTTTCA TTCTGGATGC AGGATACGCT CAAAAAAGAT GAAGCGGCAA AAACAGAAAT GCACAGTGAA ATGAAGGAGT GGCTTGACAC GCTGGATACT CCTCCAACCG CAAAAGTTTT TTGCGACTAT CTGGTCAATC GTGCAGGTTT GTTGGTCGAG ACTGGCGGCA AGGAGTACCT CTTCCGTCAT AAATCATTCC GTGAATATCT CGCAGGAGTT CAGCTCAAGG AAGATCGTCC CTATGAGTAT CTGAACACAC TTGTTGCGAA TTTTGGTGAT GACTGGTGGG AGGAACCACT CCGCTTTTTT ATAGCATCAG TTGATGCCAA AGTTTTTGAT GCCTTCATGC AAAAGCTGTT TGATTCGCCA TGGAGTGACG AGATGACACC AAAGCAGCAG TTGTTATTGC AAACAATCAT TGAAGAGGCT AAAGGAAAAA AAATTGACGC ATTGTGCAAC AAGCTGCTTG AACCGACTAC AACAGGCGGT CGGCAGCGGG TGATTCTTGA CTGCCTCAAA GCTATCAATA AACCGGTAGC GCTTGATGCG TTGCAGCAGT TCCGGGAGAA AAAACTTGCC GGAGAGAACC GGGACGTTAT CAATCGGACT GAGGAGGTGA TTCTGGCACT TGGAGGTCAA TCGCTAACTT CAAAAGCTGA AAAGAGCATC AGCGGAAAAC CGGCATCGTT CCGAAATCCC AATGAACAGA ATGCGGAGTA CATCCTGATA CCGGGCGGAA ACTACCGGTA TTCAGTTACA GACGAAATCG TGGATGTGTC AGATACTTAC TTCGCCAAGT ATCCGGTAAC CAACAAGCTT TACCGCATCT TCATTGCATG GTTGCAGGCA AAAGAGATGC CGGTTTTGTA TTCAGCATTC ACCACTGAAC TGGATGCTAT CGCAAATGAT AACAGGTGGG GAACGGATTT TGGCGGCTAT TACAATAACG GTAAAAGTGA TCTTGCGGCA CTCTTTCGTT CAAAGTATGA TGAAGATCGC AAATACGATG GAGAGGATCA GCCGGTGGTT GGGGTTACCT GGTATGCTGC CAGAGCTTAT TGCCTCTGGC TTTCCTTGCT TGAAGGTGAT AAGACATGTT ACCGTCTTCC TGATGAAATG GCGTGGGAGT GGGCAGCGGG TGGAAAGCAA GGAACAACTG GGCAGAAAGT ACGTTCTTAT CCGTGGTCTG AAGCGAAGGG AAAGCCCAAC TCAACACTTG CGAACTATAA TAAAAACATA GGCACAACGA CACCGGTTGG CAACTATCCT GAAGGAGCTA CCCCGGAAGG GCTGTATGAT ATGGCTGGCA ACGTCTGGGA GTGGATGGGC AACTGGTATG ATAAAGAAAA TGAGTGGCTA GCTCAGCGTG GTTCGTCGTA TTATAGCAGT AATGCTGATG CTCTGCGCTG CTCCTCCCGG CTCATCAACG ATCCGTGGAG CTGGTACGTC AGCCTTGGTT TTCGAGTGAT TCGTTCCAGT CCTTTTTCTT CCTGA
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Protein sequence | MPLDYKGVMV SSTFTDLKEH RAALINIIDG AGFKAVVMEH DSAKSGVDVI DSSLQMVRDS AVYIGIIAKK LGQMPKCPTR NPRSVSITEL EFNEAVRLGR PILLFLMGNE HKVIESEFEL KALNRKKLNA FRERAKNMGP DSKVHRVYAE FNSLEEFREK AAKALSDLRL AFHATPSAPE AGKETSQSVD KKHEECAECY QTILKEELGY IRMLGLPGVE SIKVNLNNDT FVPLRLSDSY ARGGLFSKES ELQGGEHILY PDEIMKQAFH DRRGRRMLLV IGDPGAGKTT LLKYYALCAL EDFAKLGFSA PLNVFYLPLR DLVRDKEGRC TENLPATLAA WSEKHHQSID AKVFNDWLNH GSSLVLLDGL DEISNIEERK EVCRWIDNAF SGFSKAWFVV TSRATGYRKD EGIELASDYE RADVQDFTPE QQERFLRNWF TAAFLKEPCE KGVHEELWQE KQKKEAEKRT TTIVAHLKVE KNKGLRQLAA IPMILQIMAI LWKEREYMPE SRVELYDAAL NYLLEFRDKR RDIKPLLSAT HARQVLGPVS FWMQDTLKKD EAAKTEMHSE MKEWLDTLDT PPTAKVFCDY LVNRAGLLVE TGGKEYLFRH KSFREYLAGV QLKEDRPYEY LNTLVANFGD DWWEEPLRFF IASVDAKVFD AFMQKLFDSP WSDEMTPKQQ LLLQTIIEEA KGKKIDALCN KLLEPTTTGG RQRVILDCLK AINKPVALDA LQQFREKKLA GENRDVINRT EEVILALGGQ SLTSKAEKSI SGKPASFRNP NEQNAEYILI PGGNYRYSVT DEIVDVSDTY FAKYPVTNKL YRIFIAWLQA KEMPVLYSAF TTELDAIAND NRWGTDFGGY YNNGKSDLAA LFRSKYDEDR KYDGEDQPVV GVTWYAARAY CLWLSLLEGD KTCYRLPDEM AWEWAAGGKQ GTTGQKVRSY PWSEAKGKPN STLANYNKNI GTTTPVGNYP EGATPEGLYD MAGNVWEWMG NWYDKENEWL AQRGSSYYSS NADALRCSSR LINDPWSWYV SLGFRVIRSS PFSS
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