| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2395 |
|---|
| Symbol | |
|---|
| ID | 6461337 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 2479848 |
|---|
| End bp | 2480954 |
|---|
| Gene Length | 1107 bp |
|---|
| Protein Length | 368 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 642728579 |
|---|
| Product | protein of unknown function DUF1016 |
|---|
| Protein accession | YP_002019202 |
|---|
| Protein GI | 194337408 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4804] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACACAC CGCTCAACAC AACAGAGTAC AGGGAGTTTA TCAAGGAACT CAAAAACCGG
ATTCAATCGG CACAACTCAA AGCTGCGGTT TCGGTCAATC AGACTATGCT TCAGTTGTAC
TGGGATTTGG CTGAACGCAT TATTGCCCGT CAACAGGCCT CGGCCTGGGG TGACGGCATT
CTCGGGCAGA TAAGCCGCGA TTTGCAGTCC GAATTTCCCG ATATGAAAGG GTTCTCCGTG
CGCAACCTGA AATATATGCG CCAGTGGTAT CGGTTCTGGT CAGGAACGAA TGCAATTGCG
AAGCAGGCTG CTACGCAATT GAACCAATCT GCAATTGGGC AACAGCCTGT TGCCCAATTT
GAAAACTCAC TATTTGGGCA GCAGCTTGTT GCCCAAATAC CGTGGAGTCA CAATCTTGTC
ATCATCAGCA AGATCAAGGA GCAAGATGAA GCGCTCTTTT ATGTGCAGCA AACCATTCAG
AATAATTGGT CGCGGGCTGT ATTAACCCAC CATATCGAAA GCCGCCTCTA CCAGCGCGAA
GGTAAGGCAA TCACCAACTT TAAGGCAACC CTGCCAGCCC CGCAATCGGA TTTGGCCCAG
CAAATTCTCA AAGACCCCTA TAATTTCGAT TTTCTTTTAC TGCGAAAAAA GCACGACGAA
AAAGAGCTTG AAGATGCCTT GATTGAGCAT GTTACCCGAT TTTTACTGGA ATTTGGCGCA
GGCTTTTCAT ATATCGGGCG GCAGTACAAG CTCGTAGTCG GTGGCGACGA CTATTATATT
GACCTCCTGT TCTACCATAC CCGTCTGCAC TGTTTTGTGG TGATTGAACT CAAAGCGGTA
AAGTTCAAGC CGGAGTTTGC CGGAAAACTG AATTTTTATG TCTCGGCAGT TGATGGTATC
CTGAAAACCG AACAGGATAA CCCCACCATA GGCATCATCA TTTGCAAGTC AAAAAATGAC
GTGGTGGTCG AATACGCACT CAAGGATATT CACAAGCCGA TTGGTGTCAG TGAATACATG
ATTACCAAAA ACCTGCCCGC AGAATATCAG TCATCCCTGC CGAGTATCGA ACAGATTGAA
GCTGAATTGG GAGGTGGCGA TGAGTGA
|
|---|
| Protein sequence | MNTPLNTTEY REFIKELKNR IQSAQLKAAV SVNQTMLQLY WDLAERIIAR QQASAWGDGI
LGQISRDLQS EFPDMKGFSV RNLKYMRQWY RFWSGTNAIA KQAATQLNQS AIGQQPVAQF
ENSLFGQQLV AQIPWSHNLV IISKIKEQDE ALFYVQQTIQ NNWSRAVLTH HIESRLYQRE
GKAITNFKAT LPAPQSDLAQ QILKDPYNFD FLLLRKKHDE KELEDALIEH VTRFLLEFGA
GFSYIGRQYK LVVGGDDYYI DLLFYHTRLH CFVVIELKAV KFKPEFAGKL NFYVSAVDGI
LKTEQDNPTI GIIICKSKND VVVEYALKDI HKPIGVSEYM ITKNLPAEYQ SSLPSIEQIE
AELGGGDE
|
|---|
| |