| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2336 |
|---|
| Symbol | |
|---|
| ID | 6462399 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 2411182 |
|---|
| End bp | 2413302 |
|---|
| Gene Length | 2121 bp |
|---|
| Protein Length | 706 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 642728525 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_002019148 |
|---|
| Protein GI | 194337354 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only
[S] Function unknown |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
[COG3347] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.308198 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAACC TATGGAATGA CGCAGATCTT CAGTGCTCCG TCAAAGAGCA GTGCAGCTCA
ACCGGGGTAC AGACAGAACT TGCAGAGCTG GTCTATGCCT CCCGTCTGCT TGGCAGCGAA
AGTTCGCTGG TGATGCATGG CGGGGGGAAT ACTTCCGTGA AATGTGAGCT GGTTGATATG
GTTGGCAACC GGGCTGAAGT GCTGTTGATC AAGGCGAGCG GTGTTGATTT GAGCCGTGTT
ACCGGTTGTG ATTACACGCC ACTCCGGCTG GTGCCGTTGC GTAAGCTGGG GGAGCTTTTC
AGCCGCAACG ATCTGATGAG TGAAGAGGCT CTTCGGCGTT TTTCAACCAA AGAGTTCAAG
CATCTCCTGC TCCTGAATAT GTTCAGTTTG ACTGATCATA TGGCCGAGCA TCGGTTGACT
CCTTCAATTG AGACTCTCCT TCACGCTTTT CTGCCGCATC GCTTTATTTT TCATACTCAT
TCGTTTGCCC TGCTCACCCT CAGCAATCAG CCCGATGGCG AAAGGCTCTG CCGTGAGACT
CTTGGTGAGA GCTTTGGTTC TGTGCCCTAT ATCAAGCCTG GCCTTGGCCT TGCCCGTTCG
GCAGCTCTGG TTTATGAGCA AAACCCGGAG ATGAAGGGGC TTGTGTTGCA GAAGCATGGT
CTGGTAACGT TTGGCGCTAC GGCGAGGGAG GCCTATTGCC GAATGATTGA TGCGGTCAGT
ACGCTTGAAG AGCGGATTGC CGCAGCCGGA AGAAAGACCT TTCCATCCGT CATCTTGCCA
GCAGAGATTG CCCCGGTTGA GGTGGTGGCT CCTGTCATCA GGGGCGCCTG TGTTGATGAA
AAGGCGCCGG GTACGCGTGA GTACCATCAG TTTATTCTTG ATTTCCGTAC TTCTCCCGCC
ATTCTTGACT ATGTGAACAG CGCTGATCTT GCTGCCATGA GTCAGAAGGG TTCCATGACC
CCTGATTTTA TTGTCCGGAC GAAAAACAGG CCGCTTGTTG TTCCTGCTCC CGATGCGGGG
GATATTGCAG GATTCAAGGT TGCGGTGCAT GAGGCTGTGC AGCGTTATTG TCGGGAGTAT
ATCGACTATT TCAATACCCA GCAGCAGGCT GCTGCCGATA TGAAGGTAAC CATGCTTGAT
CCACTGCCAA GAGTGGTGCT TGTTCCCGGT CTCGGGCTGT TTGGCCTTGG CAGGAATGCG
GAATCGGCTG CAGTTAATGC CGATATTGCA ACGGGTACTG CTCTGGCCAT TCTTGATGCT
GAATCGGTTG GCACCTTTGA ATCCATCAGC GATCGTGAAG CTTTTGAGAT CGAGTATTGG
GATATGGAGC AGGCCAAGAT GACCAAGGTT ACGCATGATG TTTTTGCCGG TAAAATTGTT
ATGGTTACCG GGGCGGCAAG TGGTATTGGT CTGGCAACGG CTAAAGCTTT CCGTCAGAGA
GGGGCCGAGC TGGTGCTTCT TGATCTGACT CGTGAAGCGC TCGATCGTGC AGCGGAGGAG
TTTGGCGGCA ATGTTCTTAC CCTCACCTGT GACGTAACTT CACGCTCAGA TGTTCGTGCA
GCTTTCGATG TCGCCTGTCG CCGGTTTGGA GGCGTGGACA TTATTGTCTC CAATGTGGGA
GCTGCCATCC AGGGGCGCAT CGGTGAGGTC TCTGATGAGT TGCTGCGCAA AAGTTTTGAA
ATAAACTTTT TTTCACACCA CTCCATTGCC CAGGAGGCTG TCAGGGTGAT GAAACTTCAG
GGTACGGGCG GTGTGCTGTT GTTCAATGTT TCAAAACAGG CTGTCAATCC AGGTCCGGAC
TTTGGCCCTT ACGGTCTGGC GAAAGCGGCG ACCATGTTTC TTGTACGGCA ATATGCGCTT
GATCACGGTC GCGATGGTAT TCGTTCAAAT GGTATCAATG CTGACCGCAT TCGCAGTGGT
CTGCTTACCG CGGAGATGAT CAAAGCCCGC TCAGCGGCAC GTGGCTTGAG TGAGAGGGAG
TATATGGCCG GAAACCTGCT GCAGCTTGAG GTAACGGCAG AGGATGTTGC CGAGGCATTT
GTTCATCTTG CGCTTGAAAT CAGGACGACC GGTTCAATTA CTACAGTGGA TGGCGGTAAT
ATTGCAGCCG CGCTTCGCTG A
|
|---|
| Protein sequence | MQNLWNDADL QCSVKEQCSS TGVQTELAEL VYASRLLGSE SSLVMHGGGN TSVKCELVDM
VGNRAEVLLI KASGVDLSRV TGCDYTPLRL VPLRKLGELF SRNDLMSEEA LRRFSTKEFK
HLLLLNMFSL TDHMAEHRLT PSIETLLHAF LPHRFIFHTH SFALLTLSNQ PDGERLCRET
LGESFGSVPY IKPGLGLARS AALVYEQNPE MKGLVLQKHG LVTFGATARE AYCRMIDAVS
TLEERIAAAG RKTFPSVILP AEIAPVEVVA PVIRGACVDE KAPGTREYHQ FILDFRTSPA
ILDYVNSADL AAMSQKGSMT PDFIVRTKNR PLVVPAPDAG DIAGFKVAVH EAVQRYCREY
IDYFNTQQQA AADMKVTMLD PLPRVVLVPG LGLFGLGRNA ESAAVNADIA TGTALAILDA
ESVGTFESIS DREAFEIEYW DMEQAKMTKV THDVFAGKIV MVTGAASGIG LATAKAFRQR
GAELVLLDLT REALDRAAEE FGGNVLTLTC DVTSRSDVRA AFDVACRRFG GVDIIVSNVG
AAIQGRIGEV SDELLRKSFE INFFSHHSIA QEAVRVMKLQ GTGGVLLFNV SKQAVNPGPD
FGPYGLAKAA TMFLVRQYAL DHGRDGIRSN GINADRIRSG LLTAEMIKAR SAARGLSERE
YMAGNLLQLE VTAEDVAEAF VHLALEIRTT GSITTVDGGN IAAALR
|
|---|
| |