| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2255 |
|---|
| Symbol | |
|---|
| ID | 6462320 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | + |
|---|
| Start bp | 2337657 |
|---|
| End bp | 2338796 |
|---|
| Gene Length | 1140 bp |
|---|
| Protein Length | 379 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 642728443 |
|---|
| Product | beta-lactamase |
|---|
| Protein accession | YP_002019067 |
|---|
| Protein GI | 194337273 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.234898 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCGAC TGCTCCGCTT TGTTATTGCA TCATGCATAC TCTTTGCAGG ATCAGGCGGA
GCGCTTCCAT CAAAGAGCAT GGCTTATGAT TTCAAGCCGC TTGAAGCCGT CGTGCAAAAA
GCCGTAAGCG ATACGGTCTT TCCGGGAGCA AGCCTCGCCG TTCTTTACAA GGGAAAGGTT
GTTTTTCATA ACGCATTCGG AAGGATGACC TATGACCCGA AAAGCAGCCC GGTAGAGACG
ACAACCATGT ACGATCTTGC CTCTCTGACC AAAGCTATTG TCACCACGAG CATTGCCATG
CAGCTTGTTG ATCGGGACTC ACTCTCTATT CAAACTCCAG TATCCCGTTA TCTGCCAGCT
TTTGCACAGA AAGGCAAGGA TGCAGTGACG ATCGAGCAGC TCCTGCGCCA TACCTCCGGA
TTACGGGCCC ACACGTTTTA TGCAAAAAGC TGCCGTACCC CCGAAGAGCT TTTCCGGGCC
ATTGAAGCCG ATACGCTGCT CTCACAACCC GGCAAAACCA CCCTCTACAG CGATCTCAAC
TTCATGCTTC TTGGCAGAAT CATTGAGATG ATAACCGGCA AAACCCTTGC CGCTAACTTT
CATCGACGTT TTGCTGAGCC ACTTGGCATG AGTTCGACCA TGTTCACCCC ACCACCATCG
CAGAGCGGAC GTATTGCACC GGTGGACAAG GATACGCTCT GGCCATTGGA GGCGCCAAGG
CCCCTCGTCA ACGATCAGAA TGCTGCGCTG CTCGGAGGCG TTGCCGGTCA TGCCGGACTC
TTTTCAACCA CAGGTGACCT CCTTGGCATG GTCTCTATGC TTATGGATGG AGGAAGCATC
AATGGCCAAA CGTACTTCCG AACAGCCACA CTCAGGAAAT TTCTCTCCCG AAACGGCTAT
CCAAGAGCGC TGGGATGGGA TTTACGCTCT CCGGATGGTC ACTCTTCAGC GGGAGACTAC
TTTTCCGCAT CCTCGTACGG CCATCTTGGC TACACGGGAA CCAGCATCTG GATTGATCCC
GAAAAGGAGC TTGCAGTCAT TCTGCTCAGC AACAGGGTCT ATCCCACATC AGAAAACATC
AAAATCCGCA CTTTTCGCCC CTTGCTTCAC AACACCGTTG TGCAATGCCT GGGGGATTAG
|
|---|
| Protein sequence | MPRLLRFVIA SCILFAGSGG ALPSKSMAYD FKPLEAVVQK AVSDTVFPGA SLAVLYKGKV
VFHNAFGRMT YDPKSSPVET TTMYDLASLT KAIVTTSIAM QLVDRDSLSI QTPVSRYLPA
FAQKGKDAVT IEQLLRHTSG LRAHTFYAKS CRTPEELFRA IEADTLLSQP GKTTLYSDLN
FMLLGRIIEM ITGKTLAANF HRRFAEPLGM SSTMFTPPPS QSGRIAPVDK DTLWPLEAPR
PLVNDQNAAL LGGVAGHAGL FSTTGDLLGM VSMLMDGGSI NGQTYFRTAT LRKFLSRNGY
PRALGWDLRS PDGHSSAGDY FSASSYGHLG YTGTSIWIDP EKELAVILLS NRVYPTSENI
KIRTFRPLLH NTVVQCLGD
|
|---|
| |