| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2169 |
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| Symbol | |
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| ID | 6462021 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | + |
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| Start bp | 2253199 |
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| End bp | 2256645 |
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| Gene Length | 3447 bp |
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| Protein Length | 1148 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 642728365 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_002018989 |
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| Protein GI | 194337195 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTGCACAA CAAATTCCCT TCCGGAGAGC AAGCTGGCCA ACGATCCGGT TTTTGCATTG
CTGGAGTCCC TTCCTGAAGA AGCTCTTCTC ATCGACCCAA ACGGCATAAT TCTTACTGCC
AACACCCTGT TTGCCGCACG TTTCAGCATC TCTGCAGAGG AGTGCATCGG CTCTGTAGTC
TATGATTTGA TTGCAACCAT ACTGCAAATT CCAGAACAGG CGTTTCACTA CAAAGAAAAG
ATTGGAGAGG TACTTCGCCT GGGCAAACGA ATGGTTTTTG AAGATGGAAA AGGGAATTTG
AATTGGAAAT TTACCATTAA TCCCGTCTTG TCACCGGAAG GGACGATCAC TCGATTGTTC
ATCACCATTG CAGATATCTC CCGGCAAAAA CAGAAGGAGA CAAGGTTCAA TGAATGCAAG
GTAAAGTTTA ACCAGGCCCT TGAAGCTGCA CGAGCGGGCG TCTGGGAATG GGACTTGACA
ACGAACGATA ATATCTGGTC GGACGAAATA TGGCCGTTAT ACGGGCTGGA GCCAACCAAT
AATAATCCCT CCTTCCATCT CTGGGCAAGT GTCATTCATC CTGAAGATCG TGACTCTGTC
ATAAGCGCTG TTACTGAAGC CGCAAAATGT GACGCCGAGC TGAACATTGA ATATCGCGTC
TGTTATCCCG ACGGCTCCAT GCACTGGCTG ATGTCCCGAG GCAAACCCTT GCATGACCTC
AACGGCAGGA CAGTGCGCTA CATCGGAACG ATTATTGATA TCACCAAACG CAAGGAGTTT
CAGGAGAGGC TTCTTGCCGC CAATGAGCGA ATGCATTTTA TTCTGGCCGC GACCAGTTCC
GGTACCTGGG AACATGATAT AACCACAAAT ACCAATATCT GGTCAGATGA AATATGGAGT
CTCTACGGGC TTAAACCAAA CAGTGTTGAA CTGAACTATG AAAGCTGGAT AAACACCATT
ATCCCGGAAG AGAGGGAACG AGTGAGACAA GCCACCATTG ATGCCGTAAA TAAGGGTTGC
GAGTTCATTT GTTCCTGGCG TATTCCCGGA GCTGATGGAG CAGTACGATG GCTCATGTCG
AAAGGAACTC CGGTAAAAGA TTCCGAAGGA AAAATAGTTC GGTATGCCGG TATCATGATT
GACATCACTG ATCAAAAACA GAGGGATGAT GCACTCAAAG AGAGCGAAAA TCGCTTCAGG
ATGGTGTTTG AAAAGCATTC ATCGATCATG CTCGTTATTG AGCCCGATAC GGGCAGAATC
ATAGACGTGA ATCAAGCGGC TGTCAACTTT TACAAGTGGC CAACTGAAAC GCTCAAACAG
ATGACCATCC GGCAGATCAC TACAGAGCCG TTTGAGAGCA GACAGAACCA GACCCATCAG
ATAGCCGATG GCTCAATACG TGATGTTGAA GTGTACAGTT GCTTGATTCC ATTTGGTGAA
AAGGAAATAC TCTATGCCAT CATGAACGAC ATCACGGAGC GCAAAAAGGT TGAACAGGCG
CTAGCCGTAA GTGAAAAAAT GTTTCGTTCC ATTACCGAAC AAATTTCCGA GATCGTTTTT
ATTACGGATC AAAGTGGAAT TACAACCTAT GTCTCACCTG CTGTTGAAAC AATTTCCGGC
TATAAAGCTG ATGAGGTGAT TGGTCATCGC TTTGTCGAGT TTATGGCTGA AGAGGACATT
GAGAGGGCGA TCAGCTCGTT TCAGAATGGG TTGATGATGC AGGTGGATGA AGTGCTCGAA
TTCCGCTACA GAAAAAAAGA TCGCTCTCTC TTTTACGCAG AAATTCATGT GCAATTTTAT
AAGCATGAAG GATTTATCGG ATATATCGGA TTGATACGCG ACATTACAGA ACGAAAAAAA
TATGAGCAGG AGTTAATCGA AAGCAGACAG CTTCTCAAGA GTATCTATAA TCAGGTCAAT
TACGCCATTT TTGTTGTCGA CATTTTAACG GATGGCACTT ACCGCTATAA CTCCATTAAC
CCGCTCAGTG AGCAAATATC GGGCGTCACA AGTAATGAAC TCGCCGGAAA AACACCTGAG
CAATTCTTTC CTCCCCCTAT TGCCAAATCG GTTACTCAGC ACTATAACGA CTGTATCCGT
GAAAACAAGA TCATTCACTA TGAAGAGTCC ATGATGTTTC ATGGCAAAAG CTCTTTATGG
GAGACCGTGC TGAACCCTGT TCGTAATGAA AACGGAGCTA TTTTCAGAAT TATCGGCACC
AGCGTAGATA TCACGGAACG CCGCCAAATC GAAGAGCAGA GAGCGGAACT TTCCGTTCAA
CTTCAACAGT CACAGAAAAT GGAGATGGTC GGACGACTGG CTGGAGGTAT CGCTCATGAT
TTCAATAATA TGCTGACGGT TATTCTTGGT CATTCAGAAA TGGCCATGGA AACGAGTGAC
CCCACACTGA AAACCTATGC CCAGTTTGTT GCTATCCACC AGGCGGCAAC CCACTCTGCA
AATCTGACCC GGCAACTGCT TGCTTTTGCC CGAAAACAGG TTGTCTCTCC AAAAATTGTT
GAACTGAACA CGGCGATTAC AGAGATGCTT CCCATGTTGA GGCGTCTCAT CGGTGAAAAT
ATCATGCTGA CCTGGATTCC GGAATGCAAA AATTGCTATA TCAAAATTGA TCCATCACAG
ATCGACCAGA TTCTTGTCAA TCTCTGTATC AATGCACGTG ACGCTATAAC TGGCAATGGC
AGAATCACTA TCGATAACCG TTGTGTCACT CTGCCTGAAA TCCCCTGTGA AACCGATAAA
ACTGCGTGTC ACTCCGCAGA CTATGTCTCA CTTTCTGTAC ATGATGATGG ATGTGGTATT
GAACCAAACG ATCTTCAACA TATTTTTGAG CCCTTTTTCA CCACAAAAGA GAGTGGAAAA
GGCACTGGAC TCGGTCTTTC AACCGTCTAT GGCATTGTCA AACAAAACAA CGGCAATATT
GAATGCCGAA GTGAACAGGG AAAAGGCACA ACCATAACGA TTCAACTGCC CAAGCATATG
GTACAGGCCA TAACGAATCC AGATAGAGAT CAGAAGCAAC TACTCAAGAA AGGGCATCAG
ACAATCCTGC TTGTCGAGGA TGAACCTGGC ATTCTCAAAC TCTGCAAACT CATCCTTGAA
CAGAACGGTT ATAACGTGCT GGCCTTTGAA CGAGCCGCAG ACGCCATTAG AATGGAAAAA
AATTACCCTG GAACGATCGA CCTTTTAGTG ACCGATGTCA TCATGCCGGA AATGAATGGA
GCCGAGCTTT CGAAAAAGCT GCTTGCCGCA CGCCCCGGAC TTAATGTGCT CTTTATCTCA
GGTTACACTG CTGACATTAT TCCCCAAAAT ACAATAGTTG ACAGTCAGCT AAACTTTATT
CAAAAACCGT TTAACCCCAA AACGCTGACG ACAATCATCT ATAATATCCT CAATCCGAAG
TTGCATAAGA CACCGGTAAT GGAATAA
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| Protein sequence | MCTTNSLPES KLANDPVFAL LESLPEEALL IDPNGIILTA NTLFAARFSI SAEECIGSVV
YDLIATILQI PEQAFHYKEK IGEVLRLGKR MVFEDGKGNL NWKFTINPVL SPEGTITRLF
ITIADISRQK QKETRFNECK VKFNQALEAA RAGVWEWDLT TNDNIWSDEI WPLYGLEPTN
NNPSFHLWAS VIHPEDRDSV ISAVTEAAKC DAELNIEYRV CYPDGSMHWL MSRGKPLHDL
NGRTVRYIGT IIDITKRKEF QERLLAANER MHFILAATSS GTWEHDITTN TNIWSDEIWS
LYGLKPNSVE LNYESWINTI IPEERERVRQ ATIDAVNKGC EFICSWRIPG ADGAVRWLMS
KGTPVKDSEG KIVRYAGIMI DITDQKQRDD ALKESENRFR MVFEKHSSIM LVIEPDTGRI
IDVNQAAVNF YKWPTETLKQ MTIRQITTEP FESRQNQTHQ IADGSIRDVE VYSCLIPFGE
KEILYAIMND ITERKKVEQA LAVSEKMFRS ITEQISEIVF ITDQSGITTY VSPAVETISG
YKADEVIGHR FVEFMAEEDI ERAISSFQNG LMMQVDEVLE FRYRKKDRSL FYAEIHVQFY
KHEGFIGYIG LIRDITERKK YEQELIESRQ LLKSIYNQVN YAIFVVDILT DGTYRYNSIN
PLSEQISGVT SNELAGKTPE QFFPPPIAKS VTQHYNDCIR ENKIIHYEES MMFHGKSSLW
ETVLNPVRNE NGAIFRIIGT SVDITERRQI EEQRAELSVQ LQQSQKMEMV GRLAGGIAHD
FNNMLTVILG HSEMAMETSD PTLKTYAQFV AIHQAATHSA NLTRQLLAFA RKQVVSPKIV
ELNTAITEML PMLRRLIGEN IMLTWIPECK NCYIKIDPSQ IDQILVNLCI NARDAITGNG
RITIDNRCVT LPEIPCETDK TACHSADYVS LSVHDDGCGI EPNDLQHIFE PFFTTKESGK
GTGLGLSTVY GIVKQNNGNI ECRSEQGKGT TITIQLPKHM VQAITNPDRD QKQLLKKGHQ
TILLVEDEPG ILKLCKLILE QNGYNVLAFE RAADAIRMEK NYPGTIDLLV TDVIMPEMNG
AELSKKLLAA RPGLNVLFIS GYTADIIPQN TIVDSQLNFI QKPFNPKTLT TIIYNILNPK
LHKTPVME
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