| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2147 |
|---|
| Symbol | |
|---|
| ID | 6462511 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | + |
|---|
| Start bp | 2229298 |
|---|
| End bp | 2232609 |
|---|
| Gene Length | 3312 bp |
|---|
| Protein Length | 1103 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 642728343 |
|---|
| Product | transcription-repair coupling factor |
|---|
| Protein accession | YP_002018967 |
|---|
| Protein GI | 194337173 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
|---|
| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACGT TATCAGGAAT AGAGCCACAA AGCGCTGCCG TCACAAAAAA AAATCCCGGG
TTCCTCATCG ATACCATCAG GCAATCGAAA CCGTTCATTC TGCTGAAAGA GGCGCTGCGT
AGCGCTCTGC CTGATAAAAC AGGCTGTTAT GACCCGGCTG ATGTGGCCGG CCTGCAGGGC
TCACTCTCTT CAATCATGGC TGCAACCCTG TTTACTGACC TCCCCTCCCC TCTCATGCTG
CTTTGCGGCC AGAACAGCTT CGAGCGCTAT GAAAATGATT TTGCGGCGCT TCTTCCTAAA
GAGTGCATCT GCAATACATC GGATGAACTC TCTCTCTCTA TCGGAGCGCT ATCTACCGGA
AAAAAATCGC TTATCCTCTC TTTTTTCGAT GATCTTGACG TCACACTCTG CCAGCCAGGC
GAAGCAGAAA ACCGGATTTT CCGTCTGAAA ACAGAGTTCG ATGCGGGATA TGAACCCCTG
AAACGCTTTT TGACGGCCAA CAGCTTTGAA CAAAGAGAGT TTGTTGAAGA TGAAGGCGAG
TTTTCGGTGC GGGGCTCAAT CATCGATGTC TTCCCTTTTG GAGCAGGTGA ACCCCTGCGC
ATAGAATTTT TCGGCGATAC CATCACCTCA CTGCGAGTAT TCGATATCAA CAGTCAGCTC
TCAGGAAAAA CTTTGCTGGC AGCCGATCTC ACGGCCAGCT TTACCGATGC CCTGAACAGC
GCCCCGGAGA GCGAAACAAC CATTCTTGAC TATCTTGATC CGGCAACCCT CATCATCATT
GATGATTCAA CCGAGTTTGC ATTGCGGGAT AACCATGAGA GCCTCACCAT GGCGCTTTCA
CGCTTCCGCA CTGTCAGAAT CAGCCAACTC TCGCCTTCTG CAATAGATTT CTGTTCCGGC
CCCCAGAAAA AACTGAACGC CAATTTCCGT TCGCTTGCCG CCCAACTCCA GCAGGAAACT
GCAGAACACA AAAAGCCGCT TTTTGCAACC AGTTCACGCC GCGAGATCGC TGAATTGACA
GATTTTCTTG CAGAGGAAAT TTCAAGTTCA AAAAAAACCG GACAACTTGA AGCGAGCTGG
ATTCCGGTCA ATTTGCATAC CGGATTTACT TTTGGCGATC TTGATCTCTA TACCGAATCC
GATATCTTCG GCAAGCTGCA CGCCCATAAA GCACACCGGA AACGGAAAAT CCGGGGAATT
TCACTCAAAG ATCTCCAGAA GCTTAAAGTT GGCGATTATG TTGTCCATGA GGATTACGGT
ATCGGAATTT TCCGCTCCCT TGAAACCATA ACGGCAGGGA ATTCCGAACA GGAGTGTGTG
CTTGTTGAAT ATGCCGGAGG AGACAAGCTT TTTGTCAATA TCCAGAATAT CCGGCTGCTC
TCGAAATATA CCGCATCCGA AAGCTCTCTT CCTGCCCTCT CAAAACTTGG CAGTTCAAAA
TGGGCGGCAA AAAAGGATAA AGTTCGCAAG CAGCTCCGCG ATATTGCCAT CAATCTGATC
AAGGTTTATG CACAGCGAAA AATGCAAATC GGATTTGGTT TTGCTCCCGA CTCCATCTAC
ATGCGGGAGT TCGAAGCCTC ATTTATTTTT GACGAAACGC CCGATCAGCT CAAGGCGATT
CATGACGTCA AAAAAGATAT GCAGGAGCCC CACCCGATGG ATCGTCTGAT CTGCGGTGAC
GCCGGATTCG GAAAAACCGA GATTGCCATG AGGGCCGCAT TCAAGGCGGT GGAATCGGGC
AAACAGGTTG CCGTACTGAC CCCAACAACC ATTCTTTCTC ACCAGCACGC AGAATCCTTT
ACCAGAAGAT TTGAAAATTT CCCGATTTCA ATAGCCGTGC TCAGCCGTTT TGTGCCACGC
AAGGAGCAGC AGAAGGTTAT TAAAAGAATA GCAGAGGGAA CCATTGATAT TGTAATCGGC
ACTCACCGGC TGGTCTCAAA GGATGTGCTC TTCAAGGATC TCGGACTCCT CGTCATTGAT
GAAGAGCAGC ACTTTGGCGT AGAGGTAAAA GAGAAGCTGC GTGAACAGTT CCCCGGAGTC
GATACGCTGA CCATGTCGGC CACACCCATT CCGCGAACCC TGCAGTTTTC CATGCTTGGC
GCCAGGGATC TCTCCATTGT CTCGACCCCT CCAAAAAACC GCCAGCCCGT TGAAACCCTT
ATTACCGACT ATGATCCGGC GCTCATTCAA TCGGCTATCC GCCGGGAAAT AAAGCGGGAG
GGGCAGGTCT TTTTTCTGCA TAACCGCATT GCATCGCTTG ACGATATTCT CCAGACACTC
CGCGAGCTTG TTCCCTCGGC CCGGATTGTT TTCGCTCATG GCCAACTGCC CCCGAGAGAG
CTTGAAAAGA TCATGATGGA TTTCATGCAA AAAGAGGTAG ACGTGCTCAT CTCTACCACC
ATCATTGGCT CCGGGCTCGA CATCTCCAAT GCCAATACCA TAATCATCAA CCGCGCCGAC
ATGTTTGGAC TCTCTGATCT CTACCAGTTG CGCGGAAGAG TTGGAAGAAG TGAACGAAAG
GCTTACTGCT ACCTTATCGC ACCACCGCTG AATACCCTGA AAAAAGAGGC CGTTCAGCGT
CTTGCCGTTA TTGAGAGCTT TACTGAACTG GGATCTGGTT TCAACATCGC CCTGCGCGAC
CTTGATATCC GGGGAGCAGG CAACCTGCTC GGAGCGGAGC AGTCGGGATA CATCCATGAA
CTCGGCTTCG ATCTCTACCA GAAAATGCTT GAAGAGACCG TTGCCGAACT CAAATCGACC
GAGTTCAGCC ACATGTTTTC CGCCGAAGGC GCCAAGGCCG CAAGAAGCGC CAAAACGTGT
GACCTGCTCT TCTTTTTTGA TGCCCTCATT CCGGAATACT ATCTCACCGC AACCCCTGAG
CGCTTCGCCT TTTATGACAA AATTGCGAAA GCCTCAACAG AGCATAAGGT CGATACCCTC
GAGGCAGAGC TCAAGGATCG CTTCGGCCCC CTCCCCGAAG AGGTCGGAAA CCTGCTGCTG
CTGACAAAAC TCAAAATCAC GGGATCGGCG CTCGGACTGG AAAAAATTGA CCTCCAGCCA
CAAAGCGCCA TCCTCTTTCT GCCCGATCAG GATAACGACC ATCTTGCCAA CAAGGCCTTC
CTCCAATACC TCTTTGTATC AGTGCAGGAA CCCTGGATGG AGGAGTATAA ACCGGGATTC
AAGATGGATA AAAAGATGAA GCTGGTGCTG CACCACCCTT CCGGCAGCGA TACATCACCG
GCAGGACTGC TCCACCGGTA CACCGAGCTG CTGAAAAAAC TTGAGCTGGC TTCGAAGGAG
ATGGCATTAT AA
|
|---|
| Protein sequence | MKTLSGIEPQ SAAVTKKNPG FLIDTIRQSK PFILLKEALR SALPDKTGCY DPADVAGLQG
SLSSIMAATL FTDLPSPLML LCGQNSFERY ENDFAALLPK ECICNTSDEL SLSIGALSTG
KKSLILSFFD DLDVTLCQPG EAENRIFRLK TEFDAGYEPL KRFLTANSFE QREFVEDEGE
FSVRGSIIDV FPFGAGEPLR IEFFGDTITS LRVFDINSQL SGKTLLAADL TASFTDALNS
APESETTILD YLDPATLIII DDSTEFALRD NHESLTMALS RFRTVRISQL SPSAIDFCSG
PQKKLNANFR SLAAQLQQET AEHKKPLFAT SSRREIAELT DFLAEEISSS KKTGQLEASW
IPVNLHTGFT FGDLDLYTES DIFGKLHAHK AHRKRKIRGI SLKDLQKLKV GDYVVHEDYG
IGIFRSLETI TAGNSEQECV LVEYAGGDKL FVNIQNIRLL SKYTASESSL PALSKLGSSK
WAAKKDKVRK QLRDIAINLI KVYAQRKMQI GFGFAPDSIY MREFEASFIF DETPDQLKAI
HDVKKDMQEP HPMDRLICGD AGFGKTEIAM RAAFKAVESG KQVAVLTPTT ILSHQHAESF
TRRFENFPIS IAVLSRFVPR KEQQKVIKRI AEGTIDIVIG THRLVSKDVL FKDLGLLVID
EEQHFGVEVK EKLREQFPGV DTLTMSATPI PRTLQFSMLG ARDLSIVSTP PKNRQPVETL
ITDYDPALIQ SAIRREIKRE GQVFFLHNRI ASLDDILQTL RELVPSARIV FAHGQLPPRE
LEKIMMDFMQ KEVDVLISTT IIGSGLDISN ANTIIINRAD MFGLSDLYQL RGRVGRSERK
AYCYLIAPPL NTLKKEAVQR LAVIESFTEL GSGFNIALRD LDIRGAGNLL GAEQSGYIHE
LGFDLYQKML EETVAELKST EFSHMFSAEG AKAARSAKTC DLLFFFDALI PEYYLTATPE
RFAFYDKIAK ASTEHKVDTL EAELKDRFGP LPEEVGNLLL LTKLKITGSA LGLEKIDLQP
QSAILFLPDQ DNDHLANKAF LQYLFVSVQE PWMEEYKPGF KMDKKMKLVL HHPSGSDTSP
AGLLHRYTEL LKKLELASKE MAL
|
|---|
| |