| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_2088 |
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| Symbol | |
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| ID | 6462776 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | - |
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| Start bp | 2173192 |
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| End bp | 2174766 |
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| Gene Length | 1575 bp |
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| Protein Length | 524 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 642728283 |
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| Product | phosphodiesterase |
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| Protein accession | YP_002018912 |
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| Protein GI | 194337118 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1418] Predicted HD superfamily hydrolase |
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| TIGRFAM ID | [TIGR00277] uncharacterized domain HDIG
[TIGR03319] conserved hypothetical protein YmdA/YtgF |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000367312 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGAATAG TCATAAACCT GTTTTTGATT GTTTTTGCTT CAGTGATTTT TTTTGCAGCA
GGTTTTTTGG TTGGACGTTA CTTTCTTGAG CGGATCGGTA CAACCAAGGT GCTTGAAGCA
GAAGAACGTG CGGTTCAGAT AGTGCAGGAG GCACAGAAGG AGGCCAACGA GTACAAGGAA
CTGAAAGTCA GCGAAGTAAA CCAGGAGTGG AAAAAGAAGC GTCGGGAGTT TGATCAGGAA
GTTGTTATCA AAAACAACAA GTACACCCAG TTGCAGAAGC AGACACAACA GAAGGAGGCT
CAACTGAAAA AACAGAGCCA GGATGTCAAG GATCTTGAGC GCAAACTTCA GGATCAGCGC
AAGGAGATTG ATCAGGTATC TGCGTCGCTC ACCCTTCGTT CCACAGAGCT TGAGCGCATC
ATTGTTGAGC AGAACCAGCG TCTTGAAAGC ATCAGCAACC TGCAGGCTGA AGAGGCTCGC
CAGATGTTGA TCGACAATAT GGTGGCAAAG GCAAAAGAGG AAGCGACCGA GACCATTCAC
CAGATACACG AAGAGGCTGA GCAGAAAGCA GGTCGCCTGG CCGAAAAAAC ACTCCTGACC
GCCATTCAGC GCATCTCTTT CGAGCAGGCT ACCGAAAACG CCCTTTCCGT TGTTCATATC
CAGAGCGATG AACTCAAGGG TCGCATCATT GGCCGTGAAG GTCGCAATAT CAAGGCATTT
GAAAATGCTA CCGGAGTTGA TATCATTGTT GATGATACAC CTGAGGTCGT TATTCTCTCC
TGCTTTGATC CCCTTCGTCG AGAACTTGCC AAACTGACTC TCCAGAAGCT TCTTGTCGAC
GGTATCATCC ATCCTGTGGC TATCGAAAAA GCCTATGAAG ATGCGAAAAA AGAGATTGAT
GATGTCATCA TCAGCGCCGG TGAAGAGGCG CTTTCATCGC TGCAGATTCC CGATATGCCT
GCCGAGATTG TCTCACTTAT CGGTAAAATG AAGTTTCATA CCGTCTATGG TCAAAACCTC
CTGCAGCACA GTCGTGAAGT TGCCATGTTA GCCGGTCTTA TGGCTTCAGA ACTCAAGCTT
GATGTCCGAC TTGCCAAACG TGCCGGTCTT TTGCACGATA TTGGTCTTGT GCTGCCGGAA
GGCGACGAGC CCCATGCCAT TACCGCCATG AATTATCTCA AAAAGTTCAA CGAATCCCAC
ATTGTACTCA ATGCGATTGC TGCCCATCAC GGCGATGTAA ACAAAGAGTC TCCTCTTGCC
GATCTCGTTG ATGCCGCCAA CACCATTTCG CTTTCGCGAC CGGGAGCTCG TGGTGCGGTA
ACGGCTGACG GCAATGTCAA GCGTCTTGAA AGTCTCGAAG AGATCGCCAA AGGATTTCCG
GGGGTTCTGA AAACCTATGC CCTGCAGGCA GGACGAGAGA TCAGAGTGAT TGTTGAAGGC
GATAATGTGA GTGATTCACA GGCAGATGTG CTTGCCCATG ATATTGCACA CAAAATTGAA
TCCGAAGCAC AATATCCTGG ACAGATCAAA GTATCCATCA TCCGCGAAAA ACGCTCAATT
GCTTACGCGA AATAA
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| Protein sequence | MGIVINLFLI VFASVIFFAA GFLVGRYFLE RIGTTKVLEA EERAVQIVQE AQKEANEYKE
LKVSEVNQEW KKKRREFDQE VVIKNNKYTQ LQKQTQQKEA QLKKQSQDVK DLERKLQDQR
KEIDQVSASL TLRSTELERI IVEQNQRLES ISNLQAEEAR QMLIDNMVAK AKEEATETIH
QIHEEAEQKA GRLAEKTLLT AIQRISFEQA TENALSVVHI QSDELKGRII GREGRNIKAF
ENATGVDIIV DDTPEVVILS CFDPLRRELA KLTLQKLLVD GIIHPVAIEK AYEDAKKEID
DVIISAGEEA LSSLQIPDMP AEIVSLIGKM KFHTVYGQNL LQHSREVAML AGLMASELKL
DVRLAKRAGL LHDIGLVLPE GDEPHAITAM NYLKKFNESH IVLNAIAAHH GDVNKESPLA
DLVDAANTIS LSRPGARGAV TADGNVKRLE SLEEIAKGFP GVLKTYALQA GREIRVIVEG
DNVSDSQADV LAHDIAHKIE SEAQYPGQIK VSIIREKRSI AYAK
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