Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ppha_2066 |
Symbol | |
ID | 6462819 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelodictyon phaeoclathratiforme BU-1 |
Kingdom | Bacteria |
Replicon accession | NC_011060 |
Strand | + |
Start bp | 2156424 |
End bp | 2157275 |
Gene Length | 852 bp |
Protein Length | 283 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 642728260 |
Product | shikimate 5-dehydrogenase |
Protein accession | YP_002018890 |
Protein GI | 194337096 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGAAAT CAACAAAAAT TCTCGGTCTT ATCGGCCGTG CCGTTGATTA TTCCTACTCT CCGCTTATCC ATAATACGGC ATGTCGGCTG CTTGGGCTTT CATACCATTA TACGGTTTTT AACATTGCGG ATCCCTCCAT GATCCCTGAT GCCCTTCGCG GGGCAAAAGC ACTCGGGATT GCAGGATTCA ATGTCACCAT ACCATACAAG AAGAGCGTTG TCCCCTTTCT TGACGCGCTC TCCGCAGAGG CAGCTTCCAT ACAGGCGGTC AATACCATTG TCAATGAGGG AGGAAAACTC ACCGGGCACA ACACGGATAT TGCCGGATTT GCCGCACCCC TTCTGCCATA CCGGGAGAGT ATCCGAGGCA AAACACTCTC TATTTTCGGC GCAGGCGGAG CAGCGCTGGC TGCCATAGAG GCATTCATCC GTTTTTTTTC TCCAAAAGAG ATTCTGCTCT TTGTCCGTAA CCCCGAAAAA GCCTCTTTGC TGCTTGAGGA GAGTGGCCAT GACAAAAGTG CTCCTGTCAG GATTCTTTGT TCTGATAATC CGGAAATAAT CAGGGAGTGC CGCGTTATCG TCAACGCCAC TCCAATCGGC ACCAGAGGCA ATAACGACTC ACCTCTCCCT CTTGACCGGG AGTTGCTCCA CCCTGGCCAA ATTGTCTATG ACATGGTTTA CAACCCTCTC GATACGCCAC TTCTTCTGGC TGCACAGAAG GCTGGCGCTG CAACCATATC AGGTATTGAG ATGCTGATCG GCCAGGCTGA ACACTCGTTT ACGCTCTGGA CTGGTATGCA GATGCCCGTT AAAGCGGTAA AAGAGAGCCT TCTGCAAGAA ATTCAACAAT AA
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Protein sequence | MTKSTKILGL IGRAVDYSYS PLIHNTACRL LGLSYHYTVF NIADPSMIPD ALRGAKALGI AGFNVTIPYK KSVVPFLDAL SAEAASIQAV NTIVNEGGKL TGHNTDIAGF AAPLLPYRES IRGKTLSIFG AGGAALAAIE AFIRFFSPKE ILLFVRNPEK ASLLLEESGH DKSAPVRILC SDNPEIIREC RVIVNATPIG TRGNNDSPLP LDRELLHPGQ IVYDMVYNPL DTPLLLAAQK AGAATISGIE MLIGQAEHSF TLWTGMQMPV KAVKESLLQE IQQ
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