| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1995 |
|---|
| Symbol | |
|---|
| ID | 6462987 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 2082527 |
|---|
| End bp | 2083396 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 642728194 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_002018824 |
|---|
| Protein GI | 194337030 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCCACC TCTCGGTTTC CAAAACGCTT TCAGGCACTC AAGGGACTTT TGAACTTTCG
GTGGATCTCT CTTTGCAGCC CGGGACGCTG CAGACCCTGT ACGGCAAATC GGGCAGCGGC
AAGAGCACAC TGTTGCGTAT TCTTGCCGGA TTGGTAAAAC CCGATAGCGG ACATATTGAA
GTTAATGGCC AGATATGGTT CGACAGTACT GCACGAATCA ATTTGCCGCC ACAGAAAAGA
AAGGTGGGGC TTGTTTTTCA GGATTATTCG CTTTTTCCGA CGATGACGGT GAAGGAAAAC
CTGCTGTTTG CCCAGGAAAA AAGAGATGAA CAGAAGGTAA ACCGGCTTCT TGAACTGACC
GATCTTCAGG CCCTTAAACA TCGCTATCCG GCAACCCTTT CCGGAGGTCA GCAGCAGCGG
GTTGCTTTGG CAAGAGCCAT ACTTCGGGAA CCCCACATCC TGCTGCTTGA TGAACCGCTT
TCAGCTCTCG ATCAAGTTAC CCGCAACAGG CTTCAGGATG AAATCCTGAA TTTTCACAAG
CGCTTCCGAT TGACAACCAT TCTGGTCTCT CATGATAAAC AGGAGGTTTT TAAACTTTCC
GATACGGTTA ACGTGCTTGA TCGGGGGGGT ATCATCCGCA GTGGAACCCC TCTTCAGGTT
TTTCTTGATC GCAAGAGCTC AAATAAATTT TCTTTTGCAA GCACTATCCT GAGTATCCGT
CAAGTGGACT GCATCTATCT TGCCGTTATC GGTGCTGGAA ACGAACTGGT TGAAGTTGTG
CTCAGCGAAA GCGACATCGC AACACTCAAG GTTGGCGATG AGGTGCTTGT TGCCTCGAAA
GCATTTAATC CGATTGTCAT AAAATTGTGA
|
|---|
| Protein sequence | MIHLSVSKTL SGTQGTFELS VDLSLQPGTL QTLYGKSGSG KSTLLRILAG LVKPDSGHIE
VNGQIWFDST ARINLPPQKR KVGLVFQDYS LFPTMTVKEN LLFAQEKRDE QKVNRLLELT
DLQALKHRYP ATLSGGQQQR VALARAILRE PHILLLDEPL SALDQVTRNR LQDEILNFHK
RFRLTTILVS HDKQEVFKLS DTVNVLDRGG IIRSGTPLQV FLDRKSSNKF SFASTILSIR
QVDCIYLAVI GAGNELVEVV LSESDIATLK VGDEVLVASK AFNPIVIKL
|
|---|
| |