| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1939 |
|---|
| Symbol | |
|---|
| ID | 6463141 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 2024923 |
|---|
| End bp | 2026623 |
|---|
| Gene Length | 1701 bp |
|---|
| Protein Length | 566 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 642728143 |
|---|
| Product | glycoside hydrolase family 16 |
|---|
| Protein accession | YP_002018773 |
|---|
| Protein GI | 194336979 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2273] Beta-glucanase/Beta-glucan synthetase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000600804 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGTTG AAGAGATCAT CAGGATGCTC GAAAATCCAG CGACCATTGG CGAGGCGTTG
CTTGAAGCGG CGAAGTTGCC CTTCAGGGGT GACGACAAGG TACGCTTCGA ACAAAAACGA
CAACACTATA TTGATGGATT GAGTGATCAT GAACGGCCGC GCTGGGTCGG CGAAATGAAA
AACTTTTTGT CGGTGTATGA TGGCTGTAGT GTTGGTGCAA CCGATGGAGC AGAGGCGCCA
CCCGGACCGC AACGCAATGA GTTTAAAACT GATATTTTTA TAAGCTATGC CCGCAAAGAC
CTGAAACGGG TTCAGCCAAT TGTCAAAGAG CTGCAAAAAA AGGGCTGGAG TGTTTTCTGG
GATCTGGAGA TTCCTCCGGG TGAGAGCTGG CGGAGTTATA TCAAGAAGAG GCTGGATGAA
TCACGGTGCG TGCTTGTTTT ATGGTCTCAT TTTTCCATCA CTTCCGAATG GGTCATTGCC
GAAGCAGATG AAGCGGATAA AAGGGGGATT CTTGTTCCAG CGCTTCTTGA CGCCGTTGAG
CCTCCATTTG GATTGAGTCA TATTCATGCC GCAGACCTTT CTGACTGGAA AAAAGATACC
TCTTGTAGGG CATTCAGGGA ACTTGTGAAT GCTGTTACCT CAAAAATCTA TTCTTCAAAA
CCAGCTCTCC CGGGTAAAGC GCCAGATACG GTTTCAGCTC CAGTCCCGAA GTCAGCACCA
GTAAAGGTAT CCTCAATGTC GAAGCTGCAG CCTCTGCGTA CGAGGGTTGA AAAAGGGATC
TCAGCAGTTG CGGGCCTAAG AACCTGGCAA GTCATAAGCT GGAAAACATT AATTATTGCC
TTATTAGCAT TAGCAGTAGT CATGGTGTTT ATTCTACCAA AAGTTATTTC GTATACATCT
AAAACCGTTG AAATACCTAA AGGCCAAAAG ATACTGAACG ACACTGAATC AGGAAATAAT
GAAGGTAATG ACTTAAAAAT CCTTTTTGCG GATAGTTTCA ATAACTGGGA CTACAACCAC
TGGCAAAATG GCACTTCAAA CTTTTCGTTT TACGGACGCA CTCAACAGCG CCAATTGCTT
CCAGAAGGAA AAAACGGTGT GTTACGTCTC GAACTCGATA CATACAACCC AATCAATGGC
TCTTCACCAT CCTTCTATGG AACAGAAGTT ATCTCTAATC AGACATTTTC CCCTGGAGTT
TCTGTCGAAA TCAAGGCTTA TTTCGAAAAA CCGTTGGCGG CTGGTATTGT CGGAGGCATG
TTTCTCTATA ATTCCACCGG TACCTTCCAT GACGAAATCG ATTTTACAGC GGTATCGAAT
AGGCCCAATC AAATTCAGAC AAACTTCTAT GCGAATGAAC CCCTTGGCGC AGGTCATCCT
GCTTTTAATC CAATTTCAGG TGCGTTAACC GATGAGCACA CCTACCGCAT TGAGTGGTTC
AAAAATGCAA TATTATGGTA TGTTGATGGT CAGTTGGTTC GGGAGCAGAC AAATGCTATT
CCACAGCATC CGATGGCACT TCACATGAAC ATCTGGGCTC CGGCGGCTGA TTGGCCAATC
GCCTTCAACG GAGCACTGAA CCCGGTCACA AATCCAGTCG CCAATACCGC CTTCTTTTTT
AATATCAATT CTGTGCGCGT CGCGCAGTTG CCGAAAATTC TATCTGGTAC AACACAGTCA
AGAATAAAAA TACAGTATTG A
|
|---|
| Protein sequence | MTVEEIIRML ENPATIGEAL LEAAKLPFRG DDKVRFEQKR QHYIDGLSDH ERPRWVGEMK
NFLSVYDGCS VGATDGAEAP PGPQRNEFKT DIFISYARKD LKRVQPIVKE LQKKGWSVFW
DLEIPPGESW RSYIKKRLDE SRCVLVLWSH FSITSEWVIA EADEADKRGI LVPALLDAVE
PPFGLSHIHA ADLSDWKKDT SCRAFRELVN AVTSKIYSSK PALPGKAPDT VSAPVPKSAP
VKVSSMSKLQ PLRTRVEKGI SAVAGLRTWQ VISWKTLIIA LLALAVVMVF ILPKVISYTS
KTVEIPKGQK ILNDTESGNN EGNDLKILFA DSFNNWDYNH WQNGTSNFSF YGRTQQRQLL
PEGKNGVLRL ELDTYNPING SSPSFYGTEV ISNQTFSPGV SVEIKAYFEK PLAAGIVGGM
FLYNSTGTFH DEIDFTAVSN RPNQIQTNFY ANEPLGAGHP AFNPISGALT DEHTYRIEWF
KNAILWYVDG QLVREQTNAI PQHPMALHMN IWAPAADWPI AFNGALNPVT NPVANTAFFF
NINSVRVAQL PKILSGTTQS RIKIQY
|
|---|
| |