| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1911 |
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| Symbol | |
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| ID | 6463214 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | - |
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| Start bp | 2000069 |
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| End bp | 2002381 |
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| Gene Length | 2313 bp |
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| Protein Length | 770 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 642728120 |
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| Product | ribonuclease R |
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| Protein accession | YP_002018750 |
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| Protein GI | 194336956 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCAGTTTA CCGGTGAGCG GGTGAAGCCG AATGACCATA TTCTTATTAA CGAGTTTCTT
TTCAGGCGGG GAGAGAGCTC TCTCGGTGCC GAAATTGTTA CTTTTTTTGC TGACCATGAT
GGTGAGCGCT TCAAGTCGGT AGAGTTGGCC AAAGCTCTTG GGTATACCGA ATCAAAACAA
CTTCCCGGTT TCTGGTATGT GCTGCACAAA CTGCAGGAAG AGGGGGCCGT TGACAAGGAC
TCCAACCGCT GTTATGGCAT GTCGGGCACA GAGGCGACCA CCTATGAAGA TCATCTTGAG
CTTGCCAAGC CCTTTCCTCT TCCCGGAAAG AAGCAGTACA CCGTGGCCAA GAGCTATACC
GGCCATATCT CGACCCATCC CAATGGCTAT GGTTTTGTTG ATGTCGAAGG GTTTGATGAC
GATATTTTCA TCAAGGCTGG CGATATGGGT CTCTCCATCC ATGGCGACGA AGTCGAGGTG
CTTGTTTCGA AGGTTCCGGA TACCTATTCT TCCAAATCCA CTCCCCATCA GCGCTGTGAA
GGCGCGGTGC AGAAGGTTCT TACCCGTCGT ATTACCACAA TTGTCGGTAC ACTGACCAAG
GCAAACCGCA AATTTGTGCT TAAGGCTGAC GACAGAAAGA TTCTGCCTGA AATCATTGTA
CCAATCAGAA ATGCCCGCAA GGCGGTTGAT GGTCAGAAGG TGCTTGTAGG GGAGCTTGAT
TTCAGCAAGG AGGGGCAGAT CCAGGCCAAG GTGCTTGAAA TTCTGGGTAC TGCGGGCGAC
TCAGCGGTTG AAGTGAGCGC CATTGCCCGG AGCCGTGGCA TTGACGAAAC CTTCGACAAA
CCACTGCTCG ATTTTGCGGC CTCCATTCGT GAGGGTATTA CCGATGAGGA TCTGAAAGGG
CGACTTGATA TTCGCGACAA GGTTGTCTTT ACCATTGATC CTGTCGATGC GAAGGATTTT
GATGATGCAC TCTCAATTGA GATGCTTGAG GATGGACAAT ATAAAATAGG CGTCCATATT
GCCGATGTAT CGCACTATGT GCCGGAAAAC TCTCCTCTTG ACCGTGAAGC GCTCAAAAGG
GCTACCTCGG TTTATCTGGT TGACCGGGTG ATTCCGATGC TGCCTGCACG GCTTTCCGAG
CAGATATGCA GCCTCAATCC TGGTGTTGAC CGGATGGCCT TTTCCGTTTT TCTGACGCTG
AGCGCTGATG GTGAAGTGCG CAAGCATGAG TTCAACAAAA CGGTTATTCA CTCCAAGCGC
CGGTTTGCCT ATGAGGATGT CGAGGAGATT CTGAAGCAGG GCAAGGGTGA TTTTGTTGAT
GAGTTGCAGG CGCTTGACCG CCTCAGTGTT CTTCTGCGTG AAAAACGCTT CAAGCATGGC
GGTCTCGATT TTGAAACCGA AGAGGTGCGT TTCAAGCTTG GCAGCAAGGG CGAACCGCTT
GAAGTGATGA AGAAGGAGCG TCTCGGCAGC CATCGTCTTA TCGAGGAGTT CATGCTGCTT
GCCAACCGCA AGGTGGCCAA ATATCTCACC AAGACCTTCA AGGAGAACAA GAAGGAGCCG
CAGCCGGTGA TCTACAGGGT GCATGGCGCT CCCCAGCAGG AGAAGGTGCT TATTCTTGCA
AACTTTGTCA AGAGGCTCGG CTTTGATCTC AAGCTGAACC GGGGCAAGGA GGGGCCGATT
GTTTCAGCCT CAGCGCTTCG GCAGCTCTTG CAGCAGGTGA AGGGTTCCAA TATTGAGTTT
CTAGTCAGCG AATTGGTGCT GCGCTGTATG TCGAAAGCGG TCTATACCGG CGACAATGTG
GGCCATTACG GTCTCGGCTT TGAGCACTAC ACCCACTTCA CCTCGCCCAT CAGGCGCTAT
CCTGACCTGA TTGTGCACCG TATGCTCTTT GAGTATGAGA ACCTCCGGAA GAAACGCCGG
AAAATCTCGG CAACACGCCT TGCTGAACTG ACCGACAAGA TCCAGACGGT CTGCCAGATA
TCAAACGAGC GTGAAAAAAG CGCTGTGGAG GCCGAGCGCG AGTCGATCAA GCTCAAGCAG
GTTGAGTATA TGGCCAGCCA TGTCGGCAAG GTCTATCCCG GTGTTATCTC AGGCGCGACC
GATTACGGCA TCTATGTGAG AATGGTTGAT TTTGCCATTG AGGGGATGGT GCACATGCGC
AATCTCACCG ATGACTATTA CGAATATGAC GAGGCAACCT ACTCTCTGGT CGGCAAACGG
CGCAAAAAGC GGTTGCAGAT TGGTCAGCGG GTCAAGGTCA AGGTGAACAG TGTGGATTTG
CAGCGCCGCA CCATTGATCT GGTTATCGAA TAA
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| Protein sequence | MQFTGERVKP NDHILINEFL FRRGESSLGA EIVTFFADHD GERFKSVELA KALGYTESKQ
LPGFWYVLHK LQEEGAVDKD SNRCYGMSGT EATTYEDHLE LAKPFPLPGK KQYTVAKSYT
GHISTHPNGY GFVDVEGFDD DIFIKAGDMG LSIHGDEVEV LVSKVPDTYS SKSTPHQRCE
GAVQKVLTRR ITTIVGTLTK ANRKFVLKAD DRKILPEIIV PIRNARKAVD GQKVLVGELD
FSKEGQIQAK VLEILGTAGD SAVEVSAIAR SRGIDETFDK PLLDFAASIR EGITDEDLKG
RLDIRDKVVF TIDPVDAKDF DDALSIEMLE DGQYKIGVHI ADVSHYVPEN SPLDREALKR
ATSVYLVDRV IPMLPARLSE QICSLNPGVD RMAFSVFLTL SADGEVRKHE FNKTVIHSKR
RFAYEDVEEI LKQGKGDFVD ELQALDRLSV LLREKRFKHG GLDFETEEVR FKLGSKGEPL
EVMKKERLGS HRLIEEFMLL ANRKVAKYLT KTFKENKKEP QPVIYRVHGA PQQEKVLILA
NFVKRLGFDL KLNRGKEGPI VSASALRQLL QQVKGSNIEF LVSELVLRCM SKAVYTGDNV
GHYGLGFEHY THFTSPIRRY PDLIVHRMLF EYENLRKKRR KISATRLAEL TDKIQTVCQI
SNEREKSAVE AERESIKLKQ VEYMASHVGK VYPGVISGAT DYGIYVRMVD FAIEGMVHMR
NLTDDYYEYD EATYSLVGKR RKKRLQIGQR VKVKVNSVDL QRRTIDLVIE
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