Gene Ppha_1892 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPpha_1892 
Symbol 
ID6463259 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelodictyon phaeoclathratiforme BU-1 
KingdomBacteria 
Replicon accessionNC_011060 
Strand
Start bp1980037 
End bp1981677 
Gene Length1641 bp 
Protein Length546 aa 
Translation table11 
GC content50% 
IMG OID642728103 
Productprotein of unknown function DUF814 
Protein accessionYP_002018735 
Protein GI194336941 
COG category[K] Transcription 
COG ID[COG1293] Predicted RNA-binding protein homologous to eukaryotic snRNP 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.256138 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAACGCA ATTACTTTAC CCTCTACCAC GCAGCAATGG AACTGCATCA GCGTCTTGCG 
GGCGGCCATC TTGAAGAAAT CTTTTCAGAG CATAAAAATG AAGTGACCCT CAGTTTCATC
ACTCTCAGCG GTCAACACCT GCAGATTATT GTTGTCACCC ATACCCCTCT GCTCTGCCTC
TATACAAGAG AAGGTAAAAA GAAAAAAAAC GTCAATTCAG CAAGCCTGAT GACCGAACTC
GCCTTGCAAA CCGTGAAAGG CGTTTCCATC TCTCCCTCTG ACCGTGAGAT CCATATCCAT
TTTGCCATTG ACGCCTTTCT GGTACTGCAA CTCTTCAGTT CAAACACAAA CCTCTTTCTT
GTCAGGGAAG AACGCATAAC CTATGCCTTC AAGCATAACA GTTCACTTGC TGGCCAGCCC
TGCCCGGCAG CTCATGACAA GAGCAGTGTT TTACGGGAAC TCGAAAGGCT TGCCATGAAC
AAAACCCTTT TTCTTGAACG CTATAACCAT CTGAAAAGCG AAAACAGCGC AGAGAGCGTT
GCTGCCACCC TTCCGGGCTT TGACCGTACA CTGGTGCATG AGCTGCTGCA ACGCGCCAAA
AACGAGCAAA ACCCGGAAGC GCTCTTCACC AGCTTTCAAT CTCTCTTTTT CGAACTGCTC
GACCCGCAGG TTACCGTGTC AGAAAAAGAA AACGGGGAAC CGGAATTCAC TCTCCTGCAC
AACAGCCATG CATCCTGCCG CTCTTTTGAC TCTGTTCTTG AAGGGCTTGC CCACTACAGC
ATCACTATGC GCCGCTATCT GGAGACAAAA GAGGAGCTGA AAGGGATGCG CTCAAAACTG
CTGCGACAAC TCGAAAAAAA ACAGAAAGCT CTCGAAGGAT TCAGCCCCGA ACTGCTTGAC
GGGTTTGCCC GGAACTATGA ACAGTGCGGC CACCTGCTCA TGGCAGCTCT CTACCAGCCA
GGAAATGATC GAAAAAGCAT CACGGTCGAA AACATATTTG AACCTGGAGC GCCAGACATA
ACCATTGCAT TGAAAGAGGC TCTGACCTTG CAAAAAAATG CGGAAGCCTA TTTTTCAAAA
GCATCAAACA CAAAAGAAAA ACTCCGAATA ATGAGGGAGA GGCACCTGCT GCTGCAAAAA
GAAAAGAGTG CACTCGAAGA GCTTCTTGCC GCAACAGAGA AGATCTCCAG CCCAAAAGAG
GCTCGCCGCT TTCTTGAACA ACAGAATCTC CGTCCGGGCG GCGCTCCGGC ACTAAAAAAT
ATCCGCACGG CACCAATATT CAGAACAGTA GACCTCACTC AAACCATTAC CCTTCTTGTC
GGAAAAAATG CGGCAAACAA CGAGCTGCTC ACCTTCAGCC ATACCAAGCC CAATGACATC
TGGCTCCATG CCCGGGGAGC CTCCGGCTCA CACTGCGTCC TGAAAGGCAC AACACTCAGC
AACCTCGCAG CAATCCGGAA AGCCGCCGAA ATTGCAGCAT GGTACTCCTC AGCAAAACAC
TCCTCACTGG TTCCGGTGAT CTACACCCTG AAAAAATATG TCCGGCGCGG CAAAAAGCTC
GCTATCGGCC AGGTGATCGT CGAGCGGGAA GAGGTGCTGC TCGTAAAACC ATCAAACAGG
CTCTTCAGCG ATCCTGTTTG A
 
Protein sequence
MQRNYFTLYH AAMELHQRLA GGHLEEIFSE HKNEVTLSFI TLSGQHLQII VVTHTPLLCL 
YTREGKKKKN VNSASLMTEL ALQTVKGVSI SPSDREIHIH FAIDAFLVLQ LFSSNTNLFL
VREERITYAF KHNSSLAGQP CPAAHDKSSV LRELERLAMN KTLFLERYNH LKSENSAESV
AATLPGFDRT LVHELLQRAK NEQNPEALFT SFQSLFFELL DPQVTVSEKE NGEPEFTLLH
NSHASCRSFD SVLEGLAHYS ITMRRYLETK EELKGMRSKL LRQLEKKQKA LEGFSPELLD
GFARNYEQCG HLLMAALYQP GNDRKSITVE NIFEPGAPDI TIALKEALTL QKNAEAYFSK
ASNTKEKLRI MRERHLLLQK EKSALEELLA ATEKISSPKE ARRFLEQQNL RPGGAPALKN
IRTAPIFRTV DLTQTITLLV GKNAANNELL TFSHTKPNDI WLHARGASGS HCVLKGTTLS
NLAAIRKAAE IAAWYSSAKH SSLVPVIYTL KKYVRRGKKL AIGQVIVERE EVLLVKPSNR
LFSDPV