Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ppha_1892 |
Symbol | |
ID | 6463259 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelodictyon phaeoclathratiforme BU-1 |
Kingdom | Bacteria |
Replicon accession | NC_011060 |
Strand | + |
Start bp | 1980037 |
End bp | 1981677 |
Gene Length | 1641 bp |
Protein Length | 546 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 642728103 |
Product | protein of unknown function DUF814 |
Protein accession | YP_002018735 |
Protein GI | 194336941 |
COG category | [K] Transcription |
COG ID | [COG1293] Predicted RNA-binding protein homologous to eukaryotic snRNP |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.256138 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAACGCA ATTACTTTAC CCTCTACCAC GCAGCAATGG AACTGCATCA GCGTCTTGCG GGCGGCCATC TTGAAGAAAT CTTTTCAGAG CATAAAAATG AAGTGACCCT CAGTTTCATC ACTCTCAGCG GTCAACACCT GCAGATTATT GTTGTCACCC ATACCCCTCT GCTCTGCCTC TATACAAGAG AAGGTAAAAA GAAAAAAAAC GTCAATTCAG CAAGCCTGAT GACCGAACTC GCCTTGCAAA CCGTGAAAGG CGTTTCCATC TCTCCCTCTG ACCGTGAGAT CCATATCCAT TTTGCCATTG ACGCCTTTCT GGTACTGCAA CTCTTCAGTT CAAACACAAA CCTCTTTCTT GTCAGGGAAG AACGCATAAC CTATGCCTTC AAGCATAACA GTTCACTTGC TGGCCAGCCC TGCCCGGCAG CTCATGACAA GAGCAGTGTT TTACGGGAAC TCGAAAGGCT TGCCATGAAC AAAACCCTTT TTCTTGAACG CTATAACCAT CTGAAAAGCG AAAACAGCGC AGAGAGCGTT GCTGCCACCC TTCCGGGCTT TGACCGTACA CTGGTGCATG AGCTGCTGCA ACGCGCCAAA AACGAGCAAA ACCCGGAAGC GCTCTTCACC AGCTTTCAAT CTCTCTTTTT CGAACTGCTC GACCCGCAGG TTACCGTGTC AGAAAAAGAA AACGGGGAAC CGGAATTCAC TCTCCTGCAC AACAGCCATG CATCCTGCCG CTCTTTTGAC TCTGTTCTTG AAGGGCTTGC CCACTACAGC ATCACTATGC GCCGCTATCT GGAGACAAAA GAGGAGCTGA AAGGGATGCG CTCAAAACTG CTGCGACAAC TCGAAAAAAA ACAGAAAGCT CTCGAAGGAT TCAGCCCCGA ACTGCTTGAC GGGTTTGCCC GGAACTATGA ACAGTGCGGC CACCTGCTCA TGGCAGCTCT CTACCAGCCA GGAAATGATC GAAAAAGCAT CACGGTCGAA AACATATTTG AACCTGGAGC GCCAGACATA ACCATTGCAT TGAAAGAGGC TCTGACCTTG CAAAAAAATG CGGAAGCCTA TTTTTCAAAA GCATCAAACA CAAAAGAAAA ACTCCGAATA ATGAGGGAGA GGCACCTGCT GCTGCAAAAA GAAAAGAGTG CACTCGAAGA GCTTCTTGCC GCAACAGAGA AGATCTCCAG CCCAAAAGAG GCTCGCCGCT TTCTTGAACA ACAGAATCTC CGTCCGGGCG GCGCTCCGGC ACTAAAAAAT ATCCGCACGG CACCAATATT CAGAACAGTA GACCTCACTC AAACCATTAC CCTTCTTGTC GGAAAAAATG CGGCAAACAA CGAGCTGCTC ACCTTCAGCC ATACCAAGCC CAATGACATC TGGCTCCATG CCCGGGGAGC CTCCGGCTCA CACTGCGTCC TGAAAGGCAC AACACTCAGC AACCTCGCAG CAATCCGGAA AGCCGCCGAA ATTGCAGCAT GGTACTCCTC AGCAAAACAC TCCTCACTGG TTCCGGTGAT CTACACCCTG AAAAAATATG TCCGGCGCGG CAAAAAGCTC GCTATCGGCC AGGTGATCGT CGAGCGGGAA GAGGTGCTGC TCGTAAAACC ATCAAACAGG CTCTTCAGCG ATCCTGTTTG A
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Protein sequence | MQRNYFTLYH AAMELHQRLA GGHLEEIFSE HKNEVTLSFI TLSGQHLQII VVTHTPLLCL YTREGKKKKN VNSASLMTEL ALQTVKGVSI SPSDREIHIH FAIDAFLVLQ LFSSNTNLFL VREERITYAF KHNSSLAGQP CPAAHDKSSV LRELERLAMN KTLFLERYNH LKSENSAESV AATLPGFDRT LVHELLQRAK NEQNPEALFT SFQSLFFELL DPQVTVSEKE NGEPEFTLLH NSHASCRSFD SVLEGLAHYS ITMRRYLETK EELKGMRSKL LRQLEKKQKA LEGFSPELLD GFARNYEQCG HLLMAALYQP GNDRKSITVE NIFEPGAPDI TIALKEALTL QKNAEAYFSK ASNTKEKLRI MRERHLLLQK EKSALEELLA ATEKISSPKE ARRFLEQQNL RPGGAPALKN IRTAPIFRTV DLTQTITLLV GKNAANNELL TFSHTKPNDI WLHARGASGS HCVLKGTTLS NLAAIRKAAE IAAWYSSAKH SSLVPVIYTL KKYVRRGKKL AIGQVIVERE EVLLVKPSNR LFSDPV
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