| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1890 |
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| Symbol | |
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| ID | 6463264 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | - |
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| Start bp | 1978309 |
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| End bp | 1979409 |
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| Gene Length | 1101 bp |
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| Protein Length | 366 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 642728101 |
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| Product | riboflavin biosynthesis protein RibD |
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| Protein accession | YP_002018733 |
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| Protein GI | 194336939 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.22105 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTGCAGC ATGATGATCT TTTTTTTATG AGGCGCGCCC TTGAACTTGC CGTGCTGGGT
GCCGGATCGG TTAGCCCTAA CCCCATGGTT GGCGCGGTTA TTGTTTGTGA CGGTGAGATT
ATTGGTGAAG GTTACCATCA GCAGTTTGGC GGGCCTCATG CCGAAGTCCA TGCCATTGCG
TCGGTGGAGG ATGAGGCGTT GCTTCATCAT TCGACACTCT ATGTTACACT TGAGCCCTGT
TCCCATTTTG GCAAAACTCC TCCCTGCAGC GATCTGATTG TTGAGAAGGG GATACCCCGT
GTTGTCATCG GTTGCCGGGA CCCTCATGTC AAGGTGGCTG GAAAGGGGAT TGCAAAGCTG
CAGGCAGCGG GGATCAGGGT TACTGAAGGG GTTTTGGAAG CGGAGTGTAT CGGCTGTAAT
GAGGCTTTCA TCAAAAGCCA TACCACAGGG TTACCTTTTG TTTGCCTGAA ACTGGCCCAG
ACCCTTGATG GTAAAATTGC GACCTCGCTT GGAGCCTCCC GCTGGATAAC GGGGGAAGAG
TCGAGAAGTG AGGTGCATCG CCTTCGGAGT ATCTATGACG CGGTGATGGT TGGTGAGGCT
ACAGTTCGGG CAGATGATGC GCAACTGACC GTCAGGAACT GTTCCGGGCG TAATCCTCAG
AGAGTTGTTC TTGATAGCCA GTTACGTTTG CCCCTCGAAT CGAAAATTTT CGGATCTGAG
GCGCCAACAA TTGTTGTTGC GTCAACTTCA TTTTCGGCTT CTCCAAAGGT TGCACAGTTG
AGGGAGAGAG GTGTGACGGT GCTTTTTGTT GATGAGCATG TCGGCAAGCT TGATCTTCGC
CAGGCGCTTG TGGAGTTGCA TAAACGAGGC ATTCTTTCGG TGCTGGTAGA GGGGGGGAGC
CGCTTGTCGG CTGCATTCGT ACGTGAAAAG CTTGTTGATA AAATTCTTAT CTTTGTTGCG
CCGAAACTCT TTGGTGGAGA TGCCCTGAGC GCGTTTGCGC CGCTTGGTGT CAGCATGCCG
GATCAGGCTG TGGATCTGCG TTTCGGGAGA CCACACTTTT TTGGTCATGA TCTGCTGCTT
GAGGCTTACA TTGCATCCTG A
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| Protein sequence | MVQHDDLFFM RRALELAVLG AGSVSPNPMV GAVIVCDGEI IGEGYHQQFG GPHAEVHAIA
SVEDEALLHH STLYVTLEPC SHFGKTPPCS DLIVEKGIPR VVIGCRDPHV KVAGKGIAKL
QAAGIRVTEG VLEAECIGCN EAFIKSHTTG LPFVCLKLAQ TLDGKIATSL GASRWITGEE
SRSEVHRLRS IYDAVMVGEA TVRADDAQLT VRNCSGRNPQ RVVLDSQLRL PLESKIFGSE
APTIVVASTS FSASPKVAQL RERGVTVLFV DEHVGKLDLR QALVELHKRG ILSVLVEGGS
RLSAAFVREK LVDKILIFVA PKLFGGDALS AFAPLGVSMP DQAVDLRFGR PHFFGHDLLL
EAYIAS
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