| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1875 |
|---|
| Symbol | |
|---|
| ID | 6463316 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 1964364 |
|---|
| End bp | 1964969 |
|---|
| Gene Length | 606 bp |
|---|
| Protein Length | 201 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 642728084 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_002018718 |
|---|
| Protein GI | 194336924 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAACGCTG TACTTGACAA AGAGAGAGAG CAACTGGAGC TGGCACTTCG GGAGGAGCCC
GGGAATACCG CTCACCAATA TGCTCTGGCG TTACTCTATA TTGACCTTCA GCGCAACACG
GAGGCAATTG AGCTGCTCGA CCGCTGCATT AAGGTCAGGC CTCGTGACCC GGAGGCCCTC
TATGCACGTG CGGTCACCAA TATTTCGATG GGTGTTTATC GAAAAGCGGC CTGTGATCTG
CTGAAAACCA TTGTGCTCGA CAGGGGCTGT ATACCGGCAT ACAAACATCT TGGTTTTGTA
CAGTTTACGC TTGGCAAGGA AGAGGCGGCT TTGAAGACGC TGAAGAGAGC GCTGGAGATT
GACCCTGACT ATGTTGAAAT TTATTGCGTT TTGGGCGATG CCTATCTTGA TCTTGGTGAG
TATGACAAGG CAAAGGAGGC TTTTGAAAAA GCGCTTGATC TTGAACCTGA AAATGCTGAA
GCACACAGCA AGAGCGCCAT GTATTATTTG GCGAGAGGGG ATATGAAAGG GCTGAAAAGG
GAGTATGAAT TATTAAAAAC GCTCGATGCA GCATTGGCTG AGCAGATCGG AAGCCTCTTT
TTTTAA
|
|---|
| Protein sequence | MNAVLDKERE QLELALREEP GNTAHQYALA LLYIDLQRNT EAIELLDRCI KVRPRDPEAL
YARAVTNISM GVYRKAACDL LKTIVLDRGC IPAYKHLGFV QFTLGKEEAA LKTLKRALEI
DPDYVEIYCV LGDAYLDLGE YDKAKEAFEK ALDLEPENAE AHSKSAMYYL ARGDMKGLKR
EYELLKTLDA ALAEQIGSLF F
|
|---|
| |