Gene Ppha_1825 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPpha_1825 
Symbol 
ID6463426 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelodictyon phaeoclathratiforme BU-1 
KingdomBacteria 
Replicon accessionNC_011060 
Strand
Start bp1926795 
End bp1929344 
Gene Length2550 bp 
Protein Length849 aa 
Translation table11 
GC content45% 
IMG OID642728039 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_002018673 
Protein GI194336879 
COG category[T] Signal transduction mechanisms 
COG ID[COG2202] FOG: PAS/PAC domain
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.101601 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGAAAAAA AGTTACTCCG GTTAGAGCAG GAAAATGCCC GATTGAAAGC GCTCCTGAAA 
GAGAGAGAGG AAGAGAAGCG GATTACTTCT CTTCGAACGG GTGAGTGTCT GAGTGAAAGC
GAGGAAAAGT TCAGGATACT CTTCGACGAA CATTCAGCCG TGATGCTGGT TATTGATCCT
GATACGGCTA ACATCGTCGA TGCCAATCGT GCAGCCGCCA GCTTTTATGG CTGGTCGATT
GAGGAGCTCA GGAAGATGAA TATTCAGCAG ATCAATCTTC TTTCACCGGA TGTTGTGCTG
AAAGAGATGG AAAAAACCCG TTCATCGAAG CAAAACCGAT TTGTTTTTTG CCACCGCCTT
TTTGACGGCT CTGTGCGGGA TGTGGAGGTG TTCAGTAACC GAATTGAGAT TGGGGGCAAA
GCGTTTCTCT ATTCAGTCAT TCATGATATC ACTGAACGCA ATCAGGCTGA GCAGGAGTTG
CGCATCAGTG AAGAGCGTTT CAGGAAGCTG TTTGAAAGTC ATGCAGCGGT CAAGATTCTT
CTCGATCCTG ATACGGGCAA TATTGTTGAC GCCAATCGTG CGGCAGCAGA CTTTTATGGG
TGGTCTGTTG AGGAACTAAG GAAGATGAAT ATCAGGCAAA TCAATCCGAT CACTGTTGAA
GAGATCCAGA ATAATCTTGA TAAAAGCCGT TCAGCAAAGC AAAACCGCTT TTTCTTTCGT
CATTGCCGTT CGGATGGCTC TGTGCGTGAT GTGGAGGTCT TCTCGAGCAA GATAGAGATT
ACGGGAAAGG AATTTCTTTA TGCTATTGTT TTTGATATCA CCGAGAGCAA AAAGACCGAA
AAACTATTGA GTGACAGTGA ACTGAAGTTT CGTACGATTA CGGAACAGAT GGTTGAGGTG
GTTTTTGTTT CTGACAGGAG CGGAATTCTG ACCTATGCCT CACAGGCTAT TGAAAAGATT
TTTGGCTATA CCCCCCAGGA GGTTATCGGG GATCACTTTA CCGAGTATCT TGCTGAAGAT
GAAATTCCGG GAGCGCTTCT CATATTCAAT AAAACCTTGC AGGATGACTT GATCGATCAG
GTTGTAGAGT TCAGGTTCAG GAAAAAGAAC GGAGATTTTT TTTACGGGGA AGTTCATGTT
CACTATTTTC AGGGGCAGGA TTTATCGGGC ATGATGGGGC TGATCCGTGA TGTTACAGAG
CGCAAAAAGA ATGAAAACAG GCGTAAACAG TACGAGCAGG AGCTGCTTGA AAACGGGCTG
TTGCTCAAAA GTATCTATGA GGAGGTCAAT CATTCCATTT TTGTTGTTGA CGTCCTTCCA
GATGGTTCCT ATCAGTATAA AGGCCATAAT CCGCTTAATG AACAACTGAC AGGAATAAGC
AATCAGGAGC TTGTTGGAGC AACACCCGAA AAGCTTTTTC CTCCTCAAAT TGCTCAAAAG
TTTATCGGTA ACTACGATGC CTGTGTGCGT CGAGGCAGTT CCATACATTT TGAAGAGAAT
TTGCAATTCA TGGGTAAGGT GAGCTGGTGG GAGACGGTTC TTAATCCGGT TCGCAATGAT
TATGGTCGTA TTTACCGGAT TATCGGTACC AGTACCAAAA TTACTGCACG CAAGCTGGCT
GAACAAAAAC TGTTTCATCT TAACAAGACA CTCGAAGAGC GTATTGCAGA ACGTACCCGA
GAGCTTGAAA TAATGCATCA GCAGGTGATT CTGCATGAAA AACTTGCCTC GATTGGTCAG
CTTGCTGCCG GTATTGCCCA TGAGCTGAAT AATCCGCTCA ATTTTATCAA GATCAACTTT
TCGACCCAGA AGGAATATTT TGACGATCTC TTGTTGCTTG TAAACGAGTA CCGGGAGATT
ACAGGAAAAG TGGAGTCGAT GGGTGGATTT TTGGCTCCCG CGTTGCAAAA GCTACGCAGA
ATGGAGGCGG AGCTTGACAT TGATATGCTG CTTGATGATA TTCCGATGAT CTTTTCCGAG
TCAAATAATG GTTTCGAGCG TATGACAACC ATTATCAACA GCATGAGGAA TTTCTCCATA
ACTCACGCTC CTGATGAGCG GGTCTCGTTC GATCTCAATC AGGGACTCCG TGATATGCTT
ATTCTTGCCC GTCATGAATA TCGTGACATT GCCGGGATTG AAACCAGGTT TGATGAAGTG
CTTCCTTCGG TATACTGTAA TCCGGAACAG ATTAATCAGC TCTTTCTCAA CATGATTGTC
AATAGTGCAC ATGCAATCAA GTCACAGAAT CGGAGTTCTC CCGGCACAAT CGCGCTTCAT
ACCTGGTTCG AGGGCAGCAA GGTCTTCTGC TCAATTACCG ATGACGGGCC AGGCATACCG
GAGGAAATCA GGAGAGATAT TTTTAATCCG TTTTTCAGTA CAAAAGAACC TGGAAAAGGT
ATCGGACTCG GGTTAAGCAT TTGTTATGAC ATTGTTGTCC ATAAACATGG TGGAACTCTT
TCTGTTGAGT GTCCTGCTGG GGGAGGTACG ATTATTACCA TAGGGTTGCC TTCAAGGATC
TGTCCAGTTG CCGGTTTTCA GCCAGAGTAG
 
Protein sequence
MEKKLLRLEQ ENARLKALLK EREEEKRITS LRTGECLSES EEKFRILFDE HSAVMLVIDP 
DTANIVDANR AAASFYGWSI EELRKMNIQQ INLLSPDVVL KEMEKTRSSK QNRFVFCHRL
FDGSVRDVEV FSNRIEIGGK AFLYSVIHDI TERNQAEQEL RISEERFRKL FESHAAVKIL
LDPDTGNIVD ANRAAADFYG WSVEELRKMN IRQINPITVE EIQNNLDKSR SAKQNRFFFR
HCRSDGSVRD VEVFSSKIEI TGKEFLYAIV FDITESKKTE KLLSDSELKF RTITEQMVEV
VFVSDRSGIL TYASQAIEKI FGYTPQEVIG DHFTEYLAED EIPGALLIFN KTLQDDLIDQ
VVEFRFRKKN GDFFYGEVHV HYFQGQDLSG MMGLIRDVTE RKKNENRRKQ YEQELLENGL
LLKSIYEEVN HSIFVVDVLP DGSYQYKGHN PLNEQLTGIS NQELVGATPE KLFPPQIAQK
FIGNYDACVR RGSSIHFEEN LQFMGKVSWW ETVLNPVRND YGRIYRIIGT STKITARKLA
EQKLFHLNKT LEERIAERTR ELEIMHQQVI LHEKLASIGQ LAAGIAHELN NPLNFIKINF
STQKEYFDDL LLLVNEYREI TGKVESMGGF LAPALQKLRR MEAELDIDML LDDIPMIFSE
SNNGFERMTT IINSMRNFSI THAPDERVSF DLNQGLRDML ILARHEYRDI AGIETRFDEV
LPSVYCNPEQ INQLFLNMIV NSAHAIKSQN RSSPGTIALH TWFEGSKVFC SITDDGPGIP
EEIRRDIFNP FFSTKEPGKG IGLGLSICYD IVVHKHGGTL SVECPAGGGT IITIGLPSRI
CPVAGFQPE