Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ppha_1825 |
Symbol | |
ID | 6463426 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelodictyon phaeoclathratiforme BU-1 |
Kingdom | Bacteria |
Replicon accession | NC_011060 |
Strand | - |
Start bp | 1926795 |
End bp | 1929344 |
Gene Length | 2550 bp |
Protein Length | 849 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 642728039 |
Product | PAS/PAC sensor signal transduction histidine kinase |
Protein accession | YP_002018673 |
Protein GI | 194336879 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2202] FOG: PAS/PAC domain [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.101601 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGAAAAAA AGTTACTCCG GTTAGAGCAG GAAAATGCCC GATTGAAAGC GCTCCTGAAA GAGAGAGAGG AAGAGAAGCG GATTACTTCT CTTCGAACGG GTGAGTGTCT GAGTGAAAGC GAGGAAAAGT TCAGGATACT CTTCGACGAA CATTCAGCCG TGATGCTGGT TATTGATCCT GATACGGCTA ACATCGTCGA TGCCAATCGT GCAGCCGCCA GCTTTTATGG CTGGTCGATT GAGGAGCTCA GGAAGATGAA TATTCAGCAG ATCAATCTTC TTTCACCGGA TGTTGTGCTG AAAGAGATGG AAAAAACCCG TTCATCGAAG CAAAACCGAT TTGTTTTTTG CCACCGCCTT TTTGACGGCT CTGTGCGGGA TGTGGAGGTG TTCAGTAACC GAATTGAGAT TGGGGGCAAA GCGTTTCTCT ATTCAGTCAT TCATGATATC ACTGAACGCA ATCAGGCTGA GCAGGAGTTG CGCATCAGTG AAGAGCGTTT CAGGAAGCTG TTTGAAAGTC ATGCAGCGGT CAAGATTCTT CTCGATCCTG ATACGGGCAA TATTGTTGAC GCCAATCGTG CGGCAGCAGA CTTTTATGGG TGGTCTGTTG AGGAACTAAG GAAGATGAAT ATCAGGCAAA TCAATCCGAT CACTGTTGAA GAGATCCAGA ATAATCTTGA TAAAAGCCGT TCAGCAAAGC AAAACCGCTT TTTCTTTCGT CATTGCCGTT CGGATGGCTC TGTGCGTGAT GTGGAGGTCT TCTCGAGCAA GATAGAGATT ACGGGAAAGG AATTTCTTTA TGCTATTGTT TTTGATATCA CCGAGAGCAA AAAGACCGAA AAACTATTGA GTGACAGTGA ACTGAAGTTT CGTACGATTA CGGAACAGAT GGTTGAGGTG GTTTTTGTTT CTGACAGGAG CGGAATTCTG ACCTATGCCT CACAGGCTAT TGAAAAGATT TTTGGCTATA CCCCCCAGGA GGTTATCGGG GATCACTTTA CCGAGTATCT TGCTGAAGAT GAAATTCCGG GAGCGCTTCT CATATTCAAT AAAACCTTGC AGGATGACTT GATCGATCAG GTTGTAGAGT TCAGGTTCAG GAAAAAGAAC GGAGATTTTT TTTACGGGGA AGTTCATGTT CACTATTTTC AGGGGCAGGA TTTATCGGGC ATGATGGGGC TGATCCGTGA TGTTACAGAG CGCAAAAAGA ATGAAAACAG GCGTAAACAG TACGAGCAGG AGCTGCTTGA AAACGGGCTG TTGCTCAAAA GTATCTATGA GGAGGTCAAT CATTCCATTT TTGTTGTTGA CGTCCTTCCA GATGGTTCCT ATCAGTATAA AGGCCATAAT CCGCTTAATG AACAACTGAC AGGAATAAGC AATCAGGAGC TTGTTGGAGC AACACCCGAA AAGCTTTTTC CTCCTCAAAT TGCTCAAAAG TTTATCGGTA ACTACGATGC CTGTGTGCGT CGAGGCAGTT CCATACATTT TGAAGAGAAT TTGCAATTCA TGGGTAAGGT GAGCTGGTGG GAGACGGTTC TTAATCCGGT TCGCAATGAT TATGGTCGTA TTTACCGGAT TATCGGTACC AGTACCAAAA TTACTGCACG CAAGCTGGCT GAACAAAAAC TGTTTCATCT TAACAAGACA CTCGAAGAGC GTATTGCAGA ACGTACCCGA GAGCTTGAAA TAATGCATCA GCAGGTGATT CTGCATGAAA AACTTGCCTC GATTGGTCAG CTTGCTGCCG GTATTGCCCA TGAGCTGAAT AATCCGCTCA ATTTTATCAA GATCAACTTT TCGACCCAGA AGGAATATTT TGACGATCTC TTGTTGCTTG TAAACGAGTA CCGGGAGATT ACAGGAAAAG TGGAGTCGAT GGGTGGATTT TTGGCTCCCG CGTTGCAAAA GCTACGCAGA ATGGAGGCGG AGCTTGACAT TGATATGCTG CTTGATGATA TTCCGATGAT CTTTTCCGAG TCAAATAATG GTTTCGAGCG TATGACAACC ATTATCAACA GCATGAGGAA TTTCTCCATA ACTCACGCTC CTGATGAGCG GGTCTCGTTC GATCTCAATC AGGGACTCCG TGATATGCTT ATTCTTGCCC GTCATGAATA TCGTGACATT GCCGGGATTG AAACCAGGTT TGATGAAGTG CTTCCTTCGG TATACTGTAA TCCGGAACAG ATTAATCAGC TCTTTCTCAA CATGATTGTC AATAGTGCAC ATGCAATCAA GTCACAGAAT CGGAGTTCTC CCGGCACAAT CGCGCTTCAT ACCTGGTTCG AGGGCAGCAA GGTCTTCTGC TCAATTACCG ATGACGGGCC AGGCATACCG GAGGAAATCA GGAGAGATAT TTTTAATCCG TTTTTCAGTA CAAAAGAACC TGGAAAAGGT ATCGGACTCG GGTTAAGCAT TTGTTATGAC ATTGTTGTCC ATAAACATGG TGGAACTCTT TCTGTTGAGT GTCCTGCTGG GGGAGGTACG ATTATTACCA TAGGGTTGCC TTCAAGGATC TGTCCAGTTG CCGGTTTTCA GCCAGAGTAG
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Protein sequence | MEKKLLRLEQ ENARLKALLK EREEEKRITS LRTGECLSES EEKFRILFDE HSAVMLVIDP DTANIVDANR AAASFYGWSI EELRKMNIQQ INLLSPDVVL KEMEKTRSSK QNRFVFCHRL FDGSVRDVEV FSNRIEIGGK AFLYSVIHDI TERNQAEQEL RISEERFRKL FESHAAVKIL LDPDTGNIVD ANRAAADFYG WSVEELRKMN IRQINPITVE EIQNNLDKSR SAKQNRFFFR HCRSDGSVRD VEVFSSKIEI TGKEFLYAIV FDITESKKTE KLLSDSELKF RTITEQMVEV VFVSDRSGIL TYASQAIEKI FGYTPQEVIG DHFTEYLAED EIPGALLIFN KTLQDDLIDQ VVEFRFRKKN GDFFYGEVHV HYFQGQDLSG MMGLIRDVTE RKKNENRRKQ YEQELLENGL LLKSIYEEVN HSIFVVDVLP DGSYQYKGHN PLNEQLTGIS NQELVGATPE KLFPPQIAQK FIGNYDACVR RGSSIHFEEN LQFMGKVSWW ETVLNPVRND YGRIYRIIGT STKITARKLA EQKLFHLNKT LEERIAERTR ELEIMHQQVI LHEKLASIGQ LAAGIAHELN NPLNFIKINF STQKEYFDDL LLLVNEYREI TGKVESMGGF LAPALQKLRR MEAELDIDML LDDIPMIFSE SNNGFERMTT IINSMRNFSI THAPDERVSF DLNQGLRDML ILARHEYRDI AGIETRFDEV LPSVYCNPEQ INQLFLNMIV NSAHAIKSQN RSSPGTIALH TWFEGSKVFC SITDDGPGIP EEIRRDIFNP FFSTKEPGKG IGLGLSICYD IVVHKHGGTL SVECPAGGGT IITIGLPSRI CPVAGFQPE
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