Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ppha_1810 |
Symbol | |
ID | 6463448 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelodictyon phaeoclathratiforme BU-1 |
Kingdom | Bacteria |
Replicon accession | NC_011060 |
Strand | - |
Start bp | 1914481 |
End bp | 1916628 |
Gene Length | 2148 bp |
Protein Length | 715 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 642728025 |
Product | AAA family ATPase, CDC48 subfamily |
Protein accession | YP_002018659 |
Protein GI | 194336865 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0464] ATPases of the AAA+ class |
TIGRFAM ID | [TIGR01242] 26S proteasome subunit P45 family [TIGR01243] AAA family ATPase, CDC48 subfamily |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGCAATA CTGAGTTGGT CTTAAAAGTC AAAGAGGCAA TTGTTAAGGA TGTAGGGCGT GCAATTGCGA GAATTGATCC GAATGATATG GTTCATGCTG GTTTGGAATC GGGTGATATT GTCCTTATTG AGGGAAAACG CTCCACTCCA GTTAAAATAC TTCCTTCTTA CCCTAATGAT CGAGATAAGG GAATCATACA GATTGATGGA ATCACTCGAG AAAATGCCAT TGTTGGAATA GACGAAAAAG TTCTAATACA TAAAACAACA ATACGCAAGG CAACAAAAAT AAAACTCAAG CCGGTAACAA AATCAAGCTC TTTGATTAAG GCTGATGATG CGAAATATAT TGGTTCTCTT ATAAATGGTT TACCGGTTTC TAATGGTGAT AAAATTAAGG CGACATTATT TGGTTCCGGA TCGATATATT ATACGATTTC ATCGACCGTA CCTGATGGAG TTGTTTTGAT ACATCCTGAT ACATCAATAC AACTTGAATC TTCAAAACAA AATGAAGTAA AATCAAACAA GATTACATAC GAAGATATAG GTGGACTTGG TAATCAAGTT CAGCGAATAC GTGAAATGAT TGAATTACCC CTAAAATATC CTGAAATATT TGAAAGGTTA GGAGTCGAAC CACCAAAAGG TGTTTTTTTG TATGGACCTC CAGGTACAGG AAAGACGCTT ATTGTGAGAG CCGTCGCACA AGAGACCGAT GCTTATTTTA TAAATATATC CGGCCCTGAA ATTATGGGCA AGTATTACGG CGAAAGCGAA GCAAGAGTAC GTAATATATT TGCTGAGGCC CAGTCTCATG CGCCGTCTAT AATATTTATT GATGAAATAG ATGCAATCGC TCCAAAACGG GAGGATATGG GTGGCGAAAA GCAGGTTGAG AAAAGGGTTG TAGCTCAGCT TTTATCCTTG ATGGACGGTT TGGAGTCAAG GGGCAAAGTT ATTGTGATTG GAGCAACAAA TATTCCAAAT TCTATTGATC CCGCGCTTAG AAGGCCAGGA CGTTTCGATC GTGAGATATC AATTTCTATT CCTGATAAAA AGGGACGACT TGAAATACTT CATATCCACA CAAGGGGTAT TCCCTTGTCA GAAGATGTGG ATATGTCAAA GATTGCTGAT ATTACCCATG GTTTTGTTGG AGCTGATCTT GAAGCTCTTG CTCGCGAAGC GGCTATGACA GCGTTAAGGA AAATTCTTCC AAGGATTAAC TTTGAATTAT CAGAAATACC ATACGAGCTA TTAATGCAGT TAGAAGTTAC GATGGATAAT TTTCTTGATG CGATGAAAGA GGTCGAACCT TCTGCTATCC GTGAAGTATT TGTTGAGGTT CCTGATGTCA AGTGGGAAGA TGTTGGGGGG CTTGATGAGA TTAAGCAGGC ATTGAAAGAG ACCGTAGAGT GGCCTCTAAA ATATGCTGAA CTATTTAAAA AAACAGATAC CAATCCTCCA AAGGGTATAA TATTATATGG TAAGCCTGGC ACAGGAAAAA CATACCTTGC TAAAGCGCTT GCCAGTGAGA GTGGAGTAAA CTTTATTTCT GTAAAAGGTC CTCAAATACT TAACCGTTTT ATTGGAGAAT CTGAAAAAGG GGTAAGAGAA CTTTTCAGGC TTGCGAAACA ATCAGCGCCC ACAATTCTCT TTCTTGATGA AATAGATAGT CTTGCTCCAC GAAGAAGGAA TGATGGCGTA GAATCAGGAG TTATTGACAG AGTAATCAGT CAATTTCTCA CAGAAATGGA TGGTATTGAG GAGTTAAAAG GGGTCACTGT GCTTGCTGCA ACAAATAGAA TTGATCGTAT TGATCCCGCT TTATTACGAT CAGGAAGATT TGATCTCATG TTTGAAGTTC CATTACCGGA TTTATCAACA AGAGAGATGA TTTTTAAAAT ACATACTAAA AATATGCCTC TAAAAGAGAG TGTTAGTCTA AATGCACTTG CCGAAAAAAC CGATAATATG ACTGGCGCAG ATATACAGTT TATATGTCAA AAGGCTAAAA TGGTTGCTAT TCGTGAACTG ATTGATAAAA AAGTCGATTC AGAAACTATA GAAATAATTA TAACAGAAGA GCATTTTGAA CATGCGATAC AAGTAGTCAG CAATCAGGCA ACAAATAGAC AAAATTAA
|
Protein sequence | MSNTELVLKV KEAIVKDVGR AIARIDPNDM VHAGLESGDI VLIEGKRSTP VKILPSYPND RDKGIIQIDG ITRENAIVGI DEKVLIHKTT IRKATKIKLK PVTKSSSLIK ADDAKYIGSL INGLPVSNGD KIKATLFGSG SIYYTISSTV PDGVVLIHPD TSIQLESSKQ NEVKSNKITY EDIGGLGNQV QRIREMIELP LKYPEIFERL GVEPPKGVFL YGPPGTGKTL IVRAVAQETD AYFINISGPE IMGKYYGESE ARVRNIFAEA QSHAPSIIFI DEIDAIAPKR EDMGGEKQVE KRVVAQLLSL MDGLESRGKV IVIGATNIPN SIDPALRRPG RFDREISISI PDKKGRLEIL HIHTRGIPLS EDVDMSKIAD ITHGFVGADL EALAREAAMT ALRKILPRIN FELSEIPYEL LMQLEVTMDN FLDAMKEVEP SAIREVFVEV PDVKWEDVGG LDEIKQALKE TVEWPLKYAE LFKKTDTNPP KGIILYGKPG TGKTYLAKAL ASESGVNFIS VKGPQILNRF IGESEKGVRE LFRLAKQSAP TILFLDEIDS LAPRRRNDGV ESGVIDRVIS QFLTEMDGIE ELKGVTVLAA TNRIDRIDPA LLRSGRFDLM FEVPLPDLST REMIFKIHTK NMPLKESVSL NALAEKTDNM TGADIQFICQ KAKMVAIREL IDKKVDSETI EIIITEEHFE HAIQVVSNQA TNRQN
|
| |