| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1748 |
|---|
| Symbol | |
|---|
| ID | 6462918 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 1847028 |
|---|
| End bp | 1848041 |
|---|
| Gene Length | 1014 bp |
|---|
| Protein Length | 337 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 642727961 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_002018598 |
|---|
| Protein GI | 194336804 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.681243 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATATAC TCGTGACCGG CGCAGCCGGA TTTATAGGAT TTCATGTCTG CAAACGACTT
CTGGAACGTG GAGAGAGGGT AACCGGGGTT GATAATCTCA ATGATTATTA TGATGTCACG
CTCAAGGAGG CACGGCTGTC AATGCTTACG CCATTTGAAG GATTTACCTT TGTAAAAGCT
GATATCTCCG ACCGTGCTGC CATGGAAGAG CTGTTTGGGA AAGGGAAGTT CGATGGTGTG
ATCAATCTTG CCGCACAGGC GGGTGTGCGC TATTCAATCC AGAATCCCCA CTCCTATGTT
GAAAGCAATA TTGTGGGCTT CCTCAATATC CTCGAAGGAT GCCGCCACAA CGATGTGAAA
CATCTGGTTT ATGCATCTTC CAGTTCCATA TACGGTTCAA ATGAGACCAT GCCTTTTTCG
GTGCACGACA ATGTCGATCA TCCCCTTTCA CTCTATGCCG CCAGCAAAAA GGCCAATGAG
TTGATGGCGC ATACCTACAG CCATCTCTAC AATCTGCCAA CAACCGGGCT GCGCTTTTTT
ACCGTTTACG GGCCGTGGGG AAGGCCTGAT ATGGCGCTCT TTCTCTTTAC CAATGCCATC
CTGAACAACA AGCCCATTCA GGTATTCAAT TATGGCAAGC ATCGCCGTGA TTTTACCTTC
ATTGATGATA TTACCGAAGG AGTTCTGAGA ACACTCGATC ATGTTGCCGT GCCAAATCCC
GACTGGTCAG GCCTCACTCC CGACCCTGGG ACAAGCAAGG CGCCATGGAG AGTCTACAAT
ATCGGCAACA GCAATCCGGT CGAACTCATG GACTATATCA AGGCTCTTGA AGAGCAGCTT
GGCCGTACTG CCATAAAAGA GTTTCTCCCG CTCCAGCCCG GAGATGTGCC TGACACCTAT
GCCGACGTTG ATCAGCTTAT GCAGGATGTC CACTACAAAC CTGAAACCAC CGTGCCCGAG
GGCATACGCC GTTTTGTTGC CTGGTATCGG GAGTACTATG GAGTTCAACA GTAA
|
|---|
| Protein sequence | MNILVTGAAG FIGFHVCKRL LERGERVTGV DNLNDYYDVT LKEARLSMLT PFEGFTFVKA
DISDRAAMEE LFGKGKFDGV INLAAQAGVR YSIQNPHSYV ESNIVGFLNI LEGCRHNDVK
HLVYASSSSI YGSNETMPFS VHDNVDHPLS LYAASKKANE LMAHTYSHLY NLPTTGLRFF
TVYGPWGRPD MALFLFTNAI LNNKPIQVFN YGKHRRDFTF IDDITEGVLR TLDHVAVPNP
DWSGLTPDPG TSKAPWRVYN IGNSNPVELM DYIKALEEQL GRTAIKEFLP LQPGDVPDTY
ADVDQLMQDV HYKPETTVPE GIRRFVAWYR EYYGVQQ
|
|---|
| |