Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ppha_1678 |
Symbol | |
ID | 6463099 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelodictyon phaeoclathratiforme BU-1 |
Kingdom | Bacteria |
Replicon accession | NC_011060 |
Strand | - |
Start bp | 1786170 |
End bp | 1786829 |
Gene Length | 660 bp |
Protein Length | 219 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 642727894 |
Product | phosphate uptake regulator, PhoU |
Protein accession | YP_002018531 |
Protein GI | 194336737 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0704] Phosphate uptake regulator |
TIGRFAM ID | [TIGR02135] phosphate transport system regulatory protein PhoU |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00615654 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTCAGAAC GTCCGGTCCA TGAGCTTATC AAAGAACTCT CCCAGGTTCT TGTTCAACTC TCCGATAAAG TAGTGGGGAA TTTGCTTGAT GCCCTGCATG CTGTAAAATA TCAGGACGAA CAGGGTGCGC GCAAGATCAG GATGGTAGAT GATGAAATTG ATTTGGCCGA GGTCAACCTT GAGGAGCGCT GTCTTGCATT TCTTGCCTTG CAGCAGCCGG TAGCAAGAGA CCTTCGCACC ATTGTTACCA TTATTAAAAT CAACGATGAT CTTGAGCGTA TCGGTGACCT CGCAGTTCAT ATTATTGAAC GGATGCCGGA AATCAGTCCG GAGATGCTCG AATTATTTAA ATTTGAGCAG ATGGGTATGC GCGCCGGCGA GATGGTTAAA AATTCAATTG AAGCTTTTGT CTCCAAAGAC CGTATACTTG CAGGCCATGT GTGCGCTCTT GATGAAGAGG TCGATGTGAT GCATCGCTCC GTCTTTAAAA AAGTGATTGC CTTGATGAAA GGGCCAGACT CTGATGTTGA CCAGCTCATA GCGGCGTTAA GCATATCAAG GTATATCGAA CGCATGGCAG ACCATGCAAG TCGCATAGCC AATGAGGTGA TATTTTTGGT GACGGGTGAA ATTGTTCGCC ACAGGGGAGG ATTTTATTAA
|
Protein sequence | MSERPVHELI KELSQVLVQL SDKVVGNLLD ALHAVKYQDE QGARKIRMVD DEIDLAEVNL EERCLAFLAL QQPVARDLRT IVTIIKINDD LERIGDLAVH IIERMPEISP EMLELFKFEQ MGMRAGEMVK NSIEAFVSKD RILAGHVCAL DEEVDVMHRS VFKKVIALMK GPDSDVDQLI AALSISRYIE RMADHASRIA NEVIFLVTGE IVRHRGGFY
|
| |