| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1676 |
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| Symbol | |
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| ID | 6463103 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | - |
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| Start bp | 1784086 |
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| End bp | 1785189 |
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| Gene Length | 1104 bp |
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| Protein Length | 367 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 642727892 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_002018529 |
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| Protein GI | 194336735 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0197098 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAAAACC CGATAACGAT AGCCGGTATG CTGAAACAGC ACAAACTCGC TGCAGTCGTT
CTCCTTGCCA CTCTTTTTCT GGCACTTTTC TGGTACTCTC AGCATCGCGA ACCATCAAAA
GGAGCAGCAA AAAGAGCGGA TGAACGTATT CCTGTTTCGG TTGCCCTCAT CACCAAAGCG
GCAGTCCAGG ACAGTTTCAG TACGGTCGGT ACCGTTGAGG CCCTCAGAGA GGCTGATATC
TTTTCTGAAT CTGCAGGTCT CGTTCGCAAG GTTTCGGCTG AACCGGGGAG CTCGAAAAAG
GCCGGAGAGG CTTTGTTTAC TCTTGATGAT GAACTAACCA CCGCCCGGCA AAGGAAAGCC
GATGCACACT ACCGTCAGGC GAAGCGAGAC GTTGAACGTT ACAAAAATCT CTACAGTGAA
GGCGCTGTAG CACTTTCAGC CTATGAAAGC GTGCAGTTGC AACTCGAAGA GGCGGAAGCC
GAGTTTATAG CGGCCACCCG AAAACAGAGC GATACCCGAG TGAAAGCCCC TTTTTCAGGT
GTGGTAACTG CTCGATTTAT TGAGCAAGGG GAGTTGGTTC AAGAGGGAAA GAAGGTTGCA
CAGATGGTAG ACCTCTCGAA ACTCAAGGTC ATTATTTTTG TGCCTGAGCG GGAGATCATC
AAATTTGTGC CAGGCACACT GCTGACCGTT ACCAGCGATC TTTATCGAGG GAAAGTTTTC
AGTGGCAAAG TAAGTTCAGT GAGCGACAAG GCGGGTCGTG ACCACACCTT CAGGGTTGAA
GTTGTGCTGC AGAACTCTGC AGAGAGCATG TTCAGGTCCG GCATGTTTGC CAGGGTACTC
CTGAAAGGCA CGGGTGAGCG TCAGGCCATT CTTGTTCCGC GTGTTGCACT TGTTTCCGGA
ATCAGAAAAC CCGAACTCTT TGTTGTCCGC AACGGCAAGG CTTTTTTGAC CCCTTTTGTT
GCAGGAATGG AGTTGCAGAA GCAGCTTGAG GTTCTTGGTG GACTCTCGGT GGGCGAGAGT
GTGGTCATCA GCGGCCAGAA CGAGCTTCAT GACGGCTCTG AAGTGGTTGT TATTGACCAG
AAGAAGAACC CTGCAGCGCC ATGA
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| Protein sequence | MKNPITIAGM LKQHKLAAVV LLATLFLALF WYSQHREPSK GAAKRADERI PVSVALITKA
AVQDSFSTVG TVEALREADI FSESAGLVRK VSAEPGSSKK AGEALFTLDD ELTTARQRKA
DAHYRQAKRD VERYKNLYSE GAVALSAYES VQLQLEEAEA EFIAATRKQS DTRVKAPFSG
VVTARFIEQG ELVQEGKKVA QMVDLSKLKV IIFVPEREII KFVPGTLLTV TSDLYRGKVF
SGKVSSVSDK AGRDHTFRVE VVLQNSAESM FRSGMFARVL LKGTGERQAI LVPRVALVSG
IRKPELFVVR NGKAFLTPFV AGMELQKQLE VLGGLSVGES VVISGQNELH DGSEVVVIDQ
KKNPAAP
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