Gene Ppha_1661 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPpha_1661 
Symbol 
ID6463137 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePelodictyon phaeoclathratiforme BU-1 
KingdomBacteria 
Replicon accessionNC_011060 
Strand
Start bp1759908 
End bp1760552 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content50% 
IMG OID642727878 
ProductCRISPR-associated protein Cas4 
Protein accessionYP_002018515 
Protein GI194336721 
COG category[L] Replication, recombination and repair 
COG ID[COG1468] RecB family exonuclease 
TIGRFAM ID[TIGR00372] CRISPR-associated protein Cas4 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.975016 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTACCCTG AATCCGATTT CGTGATGCTG TCAGCATTAC AGCATTTTGT CTACTGCCCC 
CGGCAGTGTG CGCTGATCCA TCTGGAACAG ATATGGAGCG AGAACGGCTA CACTGCTGAG
GGACGGGAGA TGCATGAACG GGTCGATAAC GGTGAAACAT CATACCGGAG CGGTGTCCGT
GTAACGAGAA GTGCAGCATT GCGAAGCGCA ATACTTGGCA TTTCGGGTAT AGCTGACGTG
GTGGAATGGC ATAAGTTGAA AGATCATGAG GAGCCGTTTC CGGTTGAGTA CAAACGCGGC
AAACCGAAAA AACATGATGC AGATAAAATC CAGCTTTGTG CCCAGGCCAT GTGCCTTGAG
GAGATGCTTG GAATTCAAAT TTCAGCAGGC GCACTGTTCT ACGGCCAGAC AAAGCACCGA
CTGGATGTTG ATTTCGATGA TGTTTTGCGT GAAAAAACGG TTCTTGCTGC AGAAGGGGTG
CATGACCTCT TTCGGAATGG AGTAACACCG CCACCTGAAC CCGGACCGAA ATGCAAGCTC
TGCTCGTTGA AAGAAGAGTG CCTGCCGGAG GTGATTGTTC AGGGAAAAAC GGCGAAAGTA
TACCTTCAAA AATTGTTTCA TACACTCTCG GAGGAGGAGA TTTGA
 
Protein sequence
MYPESDFVML SALQHFVYCP RQCALIHLEQ IWSENGYTAE GREMHERVDN GETSYRSGVR 
VTRSAALRSA ILGISGIADV VEWHKLKDHE EPFPVEYKRG KPKKHDADKI QLCAQAMCLE
EMLGIQISAG ALFYGQTKHR LDVDFDDVLR EKTVLAAEGV HDLFRNGVTP PPEPGPKCKL
CSLKEECLPE VIVQGKTAKV YLQKLFHTLS EEEI