| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1590 |
|---|
| Symbol | |
|---|
| ID | 6463300 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | + |
|---|
| Start bp | 1683525 |
|---|
| End bp | 1684286 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 642727810 |
|---|
| Product | nitroreductase |
|---|
| Protein accession | YP_002018450 |
|---|
| Protein GI | 194336656 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0778] Nitroreductase |
|---|
| TIGRFAM ID | [TIGR03605] SagB-type dehydrogenase domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.208638 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAAACA AAACGGCCCT TGAAGAGTCC CGCTTCTTTC TCAAAGACAC CATCCGCCAG
AGAGTCGACT TCTCCCTGAC AGACCAGAAC CGCCGGATTC CACCTCCACC GATCGAAAAG
CCTTATGCGC CCGAAAAAAA ACAGATCGAG CTGCCAAAAA TTGAAACCCT GAATAATATC
GGACGGATCG ACCTCCGAAC GGCCATAATG AGAAGGCAAA GCTGCCGCAC ATACAGCGAT
TCTCCCCTCA CCCTTGAAGA ACTCTCTTTC CTTCTCTGGG CAACCCAGGG GGTCAAACTC
AAACTCGATT CCGGTCACGC CCTGAGGACA GTACCTTCCG CCGGATGCCG CCACGCCTTT
GAAACATACC TTTGTGTGCT GAATGTCACC GGACTTGAAA AAGGCATTTA CCGATACCTT
CCTCTTGAAC ATCACCTCAT CTTTGAATTC GAAGTTGAAA ATCTGGAACG AAAAATGACG
AAGGCTGCCT TCGGCCAGTC CTTCACCGGA GAGGCTGCCG TCACCTTCAT CTGGACCACC
ATCCCCTACC GCATGGAGTG GCGATACGGT CTCGCCGCCC ACAAGGTCAT CGCCCTTGAC
GCTGGCCACC TCTGCCAGAA CCTCTACCTT GCCTGCGAAG CCATCGACGC TGGCACCTGC
GCTATCGCCG CTTACGACCA AATCGCCATG GACAACCTGC TCAAAATCGA CGGAGAGGAT
GAATTCACCA TCTACCTTGC ACCCGTCGGT AAAAAACAGT GA
|
|---|
| Protein sequence | MTNKTALEES RFFLKDTIRQ RVDFSLTDQN RRIPPPPIEK PYAPEKKQIE LPKIETLNNI
GRIDLRTAIM RRQSCRTYSD SPLTLEELSF LLWATQGVKL KLDSGHALRT VPSAGCRHAF
ETYLCVLNVT GLEKGIYRYL PLEHHLIFEF EVENLERKMT KAAFGQSFTG EAAVTFIWTT
IPYRMEWRYG LAAHKVIALD AGHLCQNLYL ACEAIDAGTC AIAAYDQIAM DNLLKIDGED
EFTIYLAPVG KKQ
|
|---|
| |