| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1562 |
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| Symbol | |
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| ID | 6463360 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | - |
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| Start bp | 1648007 |
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| End bp | 1651141 |
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| Gene Length | 3135 bp |
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| Protein Length | 1044 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 642727786 |
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| Product | putative signal transduction protein with Nacht domain |
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| Protein accession | YP_002018426 |
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| Protein GI | 194336632 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5635] Predicted NTPase (NACHT family) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAACCAG ACACCAGAAA TGCCACCCCT GAATTCCCGC CGGATGAACT TCTGATTTTC
ATTGGGCACA GTGACGATGC TTCGGCGGAA GCTGAGGCTC TAAAGTTGTT GAGGCCGGAG
ATTGAGAAGA GCTTTCGGGA ATTTCTGAAA GTCAATTTGC ATCGTTCACG TTTTCGCAGG
TGGGTTTTTT GGGAGTGGCG TGAAGACGCG TTACCCATCA CTGGCGGTCA GGAGGCGGTT
GTCAGAGATG CTCTTGATCA TGCACGGATT GCCATTTTTG TTTTTAAAGA GCGGGTTGGC
GCTGTTACCT GGCAGGAGCT GGAAAAGGTA AGAGAGCGCA GCCGGAAGCA GCGCCTGCAT
ATTTTGGCGT TTTTTCCGGA AAAGCAGCCT GATCACGGCA CGTTTCCAAA TGCAGAGGCC
AAACTTCAGG CTGCCGAAGA TTGGACGGCA TTGCTGAAGC GTCAGATGCA GTTGACAAGT
GACTGGACGG AAAAGAACTC CTGCTCCTTG ACACCATGTC CCAATTATCA GAATTGCGAT
GATCTTGTGA AAGTTGCGCT TGAAAAGCTG AAAGTGGCTA TGGCCGATAT TCTTGCTGTT
GAGTCTCCAG CGTATCTTCC AGAGCCTTTG CCGCAGGTGG ATGTATCCGT CGCCTTGCTC
CAGCGCTACC ATGCTACCCT GAAGCAGCAG TTTGGCGATA TGACGCTGAT GGGTTCGCCA
GCGTTTGGCC ATGTGCCTTT AAAGCTTTCT GAAACCTTTG TTTCGTTAAG CCTTTCGGGA
TCGTTGCATT GTGAAGATCG CACTACTGCA CAAGGGTGCC GATGTGACGA CGTTGTGTAC
GAAAAAAGCA GTACACCGGA AAAGGTGATG CGCGGGGTCT TTTTTGAGCA GCGCTGTTCA
CTGTTGCTCA TCATCGGTGA ACCAGGTTCA GGAAAAACCA CCTTGCTGAA GCATTATGCG
CTCTGTTGCC TTGATGAACA GCAACGGGAG AGGTATGGTT TCAAGAGAGC CGTCACTGTT
TTTTTTCTGC CCTTGCGAGA GTTGCAAAAG CGGGGCAACC GGTATAGGTC ACTTGAGGAG
AACCTTGCAG CGTCGTCTCA CAAACAATTA CTCACCATCA AAAAAGAGCA CTTTACGCAG
TGGCTTGAGC AGCCTTCTGC ACTGGTGTTG CTTGATGGAC TGGATGAAAT CAGCAATGTA
AACGACCGTA TTGCTGCCTG CAAGTGGATT ACCCGGACGG TGCGACGCTT TACAAAAGCA
AAGTTTGTGG TAACGTCGCG CAGCACGGGT TACCGAAAAG GCGATGGTAT TGAAATTGAG
GCCGGACACA GACGGGCAGA CATTCTTGAT TTTTCATTGG AGCAGAAGAG GGAGTTTTTG
CAACGCTGGT TTAAAGCGGC CCTGCTTGCA GAGATTCGCC CTGGTACGAT AGCGTTTAAG
GAGTGGCAAG CAGAGCAGGA GAGCAGGGCA ACCGGAAAAG CTCAAGCAAT TCTTGCTTTT
CTTGAGGATG AAAAAAACAA AAGCCTGCGT CTGCTTGCGG GCGTGCCTTT GCTCTTGCAG
ATTATGGCAA TGCTCTGGAA AGAGCGTGGT TATCTGGCTG AAGGCCGGAT TGAGTTGTAC
GATGCGGCGC TGAACTTTAT GCTTGATTAT CGTGATCGCT ATCGAGCAAT AGAGCCATCG
CTTGCGGCAA AAGATGCACG GAGAGTATTA AGCCCGGTTT CGCTCTGGAT GCAGGATGAA
TTGAAAAAAG ATGAGGTTGA CCGGGCTGAG ATGCAGCAGC AGATGCAGGT GCAGCTTGAT
ACGCTGAACA AGTCACTACA GGCAGAAGAT TTTTGCCGGA ACCTTGTTGA TCGTGCAGGT
TTGCTGCTGG AGTATGGTGA TCATCACTAT GTTTTCCGCC ACAAATCTTT CCGCGAGTAC
ATGGCCGGAG TGCAGCTTGT CAAGAATATG CATCGGCCTG ATGCGCTGAA GAATCTGGTG
AGCCATTTTG GTGACGACTG GTGGACGGAG GTGTTTCGCT TTTTTATTGC CCATGTTGAG
GATGCTGATC TGTTCAACAG ATTTATGGAA CTGCTCTTTG ATTCACCGGT CACCGATGCA
TTGGAACCGA AGCAGCTCGA TTTGCTCATA ACCCTTATTG AAGAGGCGCC GCAGAGCAAG
AGTGATGCCT TGAAAAACAA ACTGCTTGCT CCGGGAACCA CTCTTGAACG GCAGCGTTAC
CTTCTTGAGT GCCTGAAGGC TTTTCATAAA CCGGATGCCG AAGCGGTAAT ACAGGAGTTC
CGGAAGTCAG GCTTGTCGAA AGAAAAGGTG ATTGTTGCTG ATGTAGAGCG TGATATGCTG
GAAGCGGAGT ACATCCTGAT CAAAGGCGGA ACATTCGTCT ATTCTCGGAC GAAGAAGCCG
GAAACCGTGC CTGAACTGTA CGTTGCAAAA TATACGGTGA CCAACCGGCA CTACCGCCGC
TTTACCGGCT ATCTCGATGC AAATGAGCCG GAATTTGCTG AAAGAGTGCC TGTTGAAACA
TACCGAAAGA GTTTGCAGGA GCTGGCATCG GGCATAGAGG GATTCAGCGA GTGGTTGAAA
AAAGAACCCG CTTTGGTCAG CCGCTTTCGC TCATTTTATG ATGATGACAA GCGATTCAAC
AAGGATGAAC AGCCGATTGT CGGGGTGAGC TGGTTTGCCG CCAAAGCCTG GTGCCTCTGG
CTTTCGCTGC TTGAAGGGGA GAGTGCACGG TACCAGCTTC CGGATGAAGT GCAGTGGGAG
TGGGCCGCAG GGGGCCAGCG CGACAAGCGG GATACCGTAT TAAAGGTTAG GTACTATCCC
TGGCCCGAAG AGAAGGGTAA GCCTGATAAA ACACGGGCTA ATTATAACAA TCACGAGGGG
GGGACGACAC CTGTAGGCCG TTATCCTGAG GGAGCGACGC CTGAGGGGCT CTACGATATG
GCGGGCAATG TGTGGGAGTG GACGGAGAAT TTGTATAAAA AAGAAGAAAA CTGGCGTGCA
TTAAGGGGTG GTGCGTATTA TAGTGATAAA GCTGATGCTC TGCGCTGCTC CTCCCGGTAC
GCCGACCTTC CGAGGAGCAG GAATAGCTAC ATTGGTTTTC GAGTGATTCG TTCCAGTCAT
TCTTCCTCTT CCTGA
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| Protein sequence | MQPDTRNATP EFPPDELLIF IGHSDDASAE AEALKLLRPE IEKSFREFLK VNLHRSRFRR
WVFWEWREDA LPITGGQEAV VRDALDHARI AIFVFKERVG AVTWQELEKV RERSRKQRLH
ILAFFPEKQP DHGTFPNAEA KLQAAEDWTA LLKRQMQLTS DWTEKNSCSL TPCPNYQNCD
DLVKVALEKL KVAMADILAV ESPAYLPEPL PQVDVSVALL QRYHATLKQQ FGDMTLMGSP
AFGHVPLKLS ETFVSLSLSG SLHCEDRTTA QGCRCDDVVY EKSSTPEKVM RGVFFEQRCS
LLLIIGEPGS GKTTLLKHYA LCCLDEQQRE RYGFKRAVTV FFLPLRELQK RGNRYRSLEE
NLAASSHKQL LTIKKEHFTQ WLEQPSALVL LDGLDEISNV NDRIAACKWI TRTVRRFTKA
KFVVTSRSTG YRKGDGIEIE AGHRRADILD FSLEQKREFL QRWFKAALLA EIRPGTIAFK
EWQAEQESRA TGKAQAILAF LEDEKNKSLR LLAGVPLLLQ IMAMLWKERG YLAEGRIELY
DAALNFMLDY RDRYRAIEPS LAAKDARRVL SPVSLWMQDE LKKDEVDRAE MQQQMQVQLD
TLNKSLQAED FCRNLVDRAG LLLEYGDHHY VFRHKSFREY MAGVQLVKNM HRPDALKNLV
SHFGDDWWTE VFRFFIAHVE DADLFNRFME LLFDSPVTDA LEPKQLDLLI TLIEEAPQSK
SDALKNKLLA PGTTLERQRY LLECLKAFHK PDAEAVIQEF RKSGLSKEKV IVADVERDML
EAEYILIKGG TFVYSRTKKP ETVPELYVAK YTVTNRHYRR FTGYLDANEP EFAERVPVET
YRKSLQELAS GIEGFSEWLK KEPALVSRFR SFYDDDKRFN KDEQPIVGVS WFAAKAWCLW
LSLLEGESAR YQLPDEVQWE WAAGGQRDKR DTVLKVRYYP WPEEKGKPDK TRANYNNHEG
GTTPVGRYPE GATPEGLYDM AGNVWEWTEN LYKKEENWRA LRGGAYYSDK ADALRCSSRY
ADLPRSRNSY IGFRVIRSSH SSSS
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