| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1502 |
|---|
| Symbol | |
|---|
| ID | 6463488 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 1581488 |
|---|
| End bp | 1582825 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 642727729 |
|---|
| Product | nucleotide sugar dehydrogenase |
|---|
| Protein accession | YP_002018369 |
|---|
| Protein GI | 194336575 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1004] Predicted UDP-glucose 6-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR03026] nucleotide sugar dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.239103 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATAA CCATATTTGG ATCAGGTTAT GTCGGGCTTG TTACCGGAGC CTGTTTTGCG
GAAGTCGGTA ATGATGTTCT CTGTGTCGAT ATTGACCAGC GGAAGATTGA TGCTCTCAAT
TCGGGCAAGA TTCCTATCCA TGAGCCCGGT CTTGATGAAA TCGTTGCTGA AAACATCAAG
GAAGGTCGTT TGCGTTTTAC GACGGATCTT CGTGAAGGTG TTGAGTTTGG ACTTTACCAG
TTCATTGCGG TAGGTACTCC TCCTGATGAG GATGGTTCGG CTGATTTGCG ACATGTTCTC
AGTGTTGCTG AAAGCATTGG CACCTACATG CAAGAGTACA GGATTGTCAT CAATAAATCG
ACAGTGCCGG TTGGTACAGC CGACCTTGTG CGGGAAAAAA TAGGTTCGGT TCTTGTGGAA
AGAAATGTGG ATATTGATTA CGATGTAGTC TCAAATCCCG AGTTTCTCAA AGAGGGTGAT
GCCGTCAATG ATTTCATGAA ACCTGAACGG ATTGTTGTTG GTGTCGATAA TCCTCGCACC
CGGGAGCTTC TTCGTTTTCT CTACTCTCCG TTCAATCGCA GTCATGAGCG TTTTATTGCT
ATGGATGTCC GTTCTGCCGA ATTGACCAAA TACGCGGCCA ACGCCATGCT TGCAACAAAA
ATCAGTTTCA TGAATGAGAT TGCCAACATC GCCGAGCGGG TCGGTGCTGA CGTGGAAGCA
GTAAGGAAAG GTATCGGTTC TGATTCGAGG ATCGGGTTCT CATTTATTTA CCCAGGGATT
GGTTATGGCG GTTCCTGTTT TCCCAAGGAT GTGCAGGCGC TTGAAAGAAC AGCACACAAG
CATGGGTATC ATTCACGGAT TCTTCAGGCT GTCGAGGCGG TTAATCATGA CCAGAAAAGC
AGTATTGTCA GAAAGATAAG GGGCCATTTC ACTGATGGTA TCAAGGGCTC TGTTTTCGCT
ATCTGGGGAC TCGCTTTTAA GCCGAATACC GATGATATGC GTGAAGCTCC CAGCCGCAGG
GTTATTGAAG AGCTTCTGAG TGATGGCGCC AGGGTAAGGG TTTATGATCC GGTTGCCATG
GATGAGGTTA GAAGGATATA TGGCGAACAT GACGATATTT TTTATGCCTC AAACCCGGAA
GAAGCCATAA AAGGTTCAGA TGCTCTTGTT GTACTCACGG AGTGGCTTGT GTTCCGCAGT
CCCGATTTTG AGATGATCAA ACGAGATCTT GCGCATCCGG TTGTTTTTGA CGGAAGAAAT
ATCTACAGTC CTGAATTTAT GGAGCAGTCA GGCTTTACCT ATTACTCCAT AGGTCGGCCA
CCGAGGGGAG TTTCCTGA
|
|---|
| Protein sequence | MKITIFGSGY VGLVTGACFA EVGNDVLCVD IDQRKIDALN SGKIPIHEPG LDEIVAENIK
EGRLRFTTDL REGVEFGLYQ FIAVGTPPDE DGSADLRHVL SVAESIGTYM QEYRIVINKS
TVPVGTADLV REKIGSVLVE RNVDIDYDVV SNPEFLKEGD AVNDFMKPER IVVGVDNPRT
RELLRFLYSP FNRSHERFIA MDVRSAELTK YAANAMLATK ISFMNEIANI AERVGADVEA
VRKGIGSDSR IGFSFIYPGI GYGGSCFPKD VQALERTAHK HGYHSRILQA VEAVNHDQKS
SIVRKIRGHF TDGIKGSVFA IWGLAFKPNT DDMREAPSRR VIEELLSDGA RVRVYDPVAM
DEVRRIYGEH DDIFYASNPE EAIKGSDALV VLTEWLVFRS PDFEMIKRDL AHPVVFDGRN
IYSPEFMEQS GFTYYSIGRP PRGVS
|
|---|
| |