| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1499 |
|---|
| Symbol | |
|---|
| ID | 6463492 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | + |
|---|
| Start bp | 1579407 |
|---|
| End bp | 1580054 |
|---|
| Gene Length | 648 bp |
|---|
| Protein Length | 215 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 642727726 |
|---|
| Product | thiamine monophosphate synthase |
|---|
| Protein accession | YP_002018366 |
|---|
| Protein GI | 194336572 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0352] Thiamine monophosphate synthase |
|---|
| TIGRFAM ID | [TIGR00693] thiamine-phosphate pyrophosphorylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACACA ATCGAAAAAA AGAGACTCCC CTTCCCCGCC TTCACCTCAT CAGCAGTGGC
AAGGAGAGTT CTGATACCAG CACACCTCTC CTGAATCAGC TCAGTCTCCT GCCCGGCTCT
TTTCCCTGTA TGGTTCAAAT CCGCGAAAAA CAGCTCAATG CAAAAGAGCT TTTGAATCTG
GCACTGAAAG CCCGGGCAAT CAAAGCTCCC GAAGGCACTC TTTTACTGAT AAATGAACGT
GCCGATATTG CCCTTGCTGC AGGACTTGAT GGAGTGCATC TGCCGGAAAG TGGCTGTTCA
GCCAGCAAAC TTCGTCCTTT TACACCCGGC ATGATCTATG GCTATAGTGT GCATTCTGCA
TCAGCTCTGC GCATGGCTGA AGAGTCCGGA GCTGATTACC TGCTTTTCGG TCCCGTATTC
GACACACCCT CAAAAAGGAG ATATGGGGCT CCTCAGGGTC TCGAAAAACT TGGCGCACTT
TGCCGGAGCA CCTCACTTCC GGTCTTTGCT CTTGGTGGCA TATCACCCAT GAATGCCAGG
TTCTGCATGG ACAAAGGCGC TTACGGAATA GCGGGCATCT CGCTCTTTCA AGAGCGTTCC
CGACTTGCTG AAATCATCGA ACAATTATAT CTCCACTTGC ATCCATGA
|
|---|
| Protein sequence | MKHNRKKETP LPRLHLISSG KESSDTSTPL LNQLSLLPGS FPCMVQIREK QLNAKELLNL
ALKARAIKAP EGTLLLINER ADIALAAGLD GVHLPESGCS ASKLRPFTPG MIYGYSVHSA
SALRMAEESG ADYLLFGPVF DTPSKRRYGA PQGLEKLGAL CRSTSLPVFA LGGISPMNAR
FCMDKGAYGI AGISLFQERS RLAEIIEQLY LHLHP
|
|---|
| |