| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1448 |
|---|
| Symbol | |
|---|
| ID | 6463560 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 1520529 |
|---|
| End bp | 1522028 |
|---|
| Gene Length | 1500 bp |
|---|
| Protein Length | 499 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 642727678 |
|---|
| Product | putative transcriptional regulator |
|---|
| Protein accession | YP_002018319 |
|---|
| Protein GI | 194336525 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACGTCA GCATACAGCA AATACATGAA CTGATCCGTC AGGGGGAAGG GATATCTACG
GAGTTCAAAA CCTGCAGGAA TAAGATCAAT CGCGATGTCT ATGAGACAGT TTGCGCCTTT
CTCAATCGGC ATGGCGGGAC GATTTTACTC GGTATTCAGG ATGATGGAAC CGTTCAGGGG
ATTGAGCAGG ATGCTGTAAC GCAGATCAAA AAGGACTTTG TCACTGCCAT CAACAACCCG
CTGAAGCTTA CTCCGCCAAC GTATCTCTCT GTGGATGTTG TCGAGTTGGA CGGGAAATCC
CTGCTGCGTA TCTATGTGCC GGAAAGCTCG CAGGTGCATC GCTGTAATGG TCGTATTTAT
GACCGCAATG AAGATGGCGA TCTGGATATT ACCGATCACA CCACACTGGT GGCGCATCTC
TACCAGCGTA AACAGGCGAC CTTCAGCGAA AACAAGGTAT ACCCCTGGAT TCAGGTCGAA
GATCTTCGCC CGGAATTGAT TGAAAAGTGC CGTCGATATG TTCGTATAAA CAGGGATAAT
CACCCTTGGG CGGATATGGA TGATCTGCAA CTACTCAAGA GTGCCCAGCT CTATCAGGAA
AATCCAGTTA CCAGGGAAAA CGGAGTTACT CTGGCTGGAG TTATGCTGTT TGCACCTGAC
CTGCTTATCC TGAAAGTATG TCCTGCGCAT CGAACCGACC TGATCCTGCG CAAGGTCAAT
GTTGACCGCT ACGACGACCG CGATCTGGTA CGCACCAACC TTATTGAAAG CTATGACCGC
ATTCTGGCCT TTGTCCAGAA GCATTTGCCA GACCCTTTTT ATCTTGAAGG CATTGAACGC
AGAAGCCTGC GGGATGCCAT CTTCCGTGAG GTTGCATCCA ATATCCTTAT TCACCGCGAA
TATTCCAGCG GTGTTCCGGC TCGGCTTATT ATTGAATACG GTCAGGTGAC CACCTGGAAC
GCCAATCGTC CTCACGGGTT TGGCGTGCTG AACCCCGACA ACTTCGCGCC CTATCCTAAA
AACCCGGTGA TCGGTGCATT TTTCAGGGAG ATAGACCGCG CTGACGAACT TGGTTCCGGT
ATGCGCAAGA TGATGATGTA TGGCAAAAAG TACGGCGGAG CGGACCCTCA GCTCATCGAA
GGTGACCTTT TTCGCATGAT CATCAGTGTG CCGGAATTCG GAGAAAACCC TTCAAACACT
CTTGGACGTG AGCCAGCAGC AGTTTCCTCG GGGCCAGAGT CGGGGCCAGA GTCGGGGCCA
GAGTCGGGGC CAGAGTCGAT TTTTAAAAGA ATCATCAAGG AGTTGCTCAT CGGTGCCCGA
TCAAAATCCG AATTGGCTGC TGCGCTTGGC CAAAGGTCGG TATCGGGAAA ACTGAATGAA
CGGATCCGTG AAATGCTTGC TGATGGCTTG ATTGCGCAGA CCATTCCTGA CAAGCCAACA
AGCCGATTGC AAAAATATTG TCTGACTGAG AAAGGTCGTA AATGTCTAGA AAAAAGATGA
|
|---|
| Protein sequence | MDVSIQQIHE LIRQGEGIST EFKTCRNKIN RDVYETVCAF LNRHGGTILL GIQDDGTVQG
IEQDAVTQIK KDFVTAINNP LKLTPPTYLS VDVVELDGKS LLRIYVPESS QVHRCNGRIY
DRNEDGDLDI TDHTTLVAHL YQRKQATFSE NKVYPWIQVE DLRPELIEKC RRYVRINRDN
HPWADMDDLQ LLKSAQLYQE NPVTRENGVT LAGVMLFAPD LLILKVCPAH RTDLILRKVN
VDRYDDRDLV RTNLIESYDR ILAFVQKHLP DPFYLEGIER RSLRDAIFRE VASNILIHRE
YSSGVPARLI IEYGQVTTWN ANRPHGFGVL NPDNFAPYPK NPVIGAFFRE IDRADELGSG
MRKMMMYGKK YGGADPQLIE GDLFRMIISV PEFGENPSNT LGREPAAVSS GPESGPESGP
ESGPESIFKR IIKELLIGAR SKSELAAALG QRSVSGKLNE RIREMLADGL IAQTIPDKPT
SRLQKYCLTE KGRKCLEKR
|
|---|
| |