| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1420 |
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| Symbol | |
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| ID | 6463590 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | - |
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| Start bp | 1478210 |
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| End bp | 1480639 |
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| Gene Length | 2430 bp |
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| Protein Length | 809 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 642727655 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_002018296 |
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| Protein GI | 194336502 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00128456 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCGAA AATTTTCAGT TTTTATGGCA TCACCAAGTG ATCTCGCTAA CGAGCGCCGT
TTTTTTAAAG ATGCAATTAA GCAAATCAAT ACAGGTTTTG GTGAAGGCGC AAATGTTGAA
TTTGAGCCCT TATGCTGGGA AGATACGCTC GCCTCAACGG GTCGTCGAAG TCAGGGAGTG
ATCAATAAAG AAATTGATAA ATGTGATGTG TTTATTCTGG CAATGTACAG ACGATGGGGT
CAGGATGCGC CCGACGCAGC GCCATACACA TCATATACTG AAGAAGAGTA TCACAGAGCT
TTGAGTCGAT GGCAAACTGA GGGTTCCCCT GAAATCTTTG TCTTCTTTAA ACGAGTTGAT
GCAGCAGTTG AGGGTGATCC AGGAGTTCAA CTAAAGAAGG TAATTGATTT CAGAAAAAGT
TTAGAGAATA CCAGAAAAAT ACTTTACCAC TATTTCGACG ATGAGGCGGG TTTTATCCTC
GAAGTGGATC GCCACCTTCG AGCCTACGCT AAAGGAGAAC TACCTAAAGC CGACCAGCAA
CGAGATATAG TCCTTCTTCC GTTGGCAGTC GTCGAAGAGG TGAATAAGGC GAAAACCTAT
GCAGAACAAA AGGCGCTGGA AGCAGAGCTG GCCCATGAAG ATGCGGAAAA AACGCACCTA
AGATTGGAAC TGATTCAGTT ACAAACAGCG AAAGATGCCG CTGAATTATC AAAAGAGGGA
AAGATTGAAT ATGCGCGGCA AAAATTCTCT GAACTTATAA CAGAAACAGA AGATATCAGA
ATTTTATCTC TCGGATATGA ATTTTTCTAT CGTACGGGTG ATTTTGTTTC GGCCTTTCAG
GTTTTGAACA AGTGGTTAAA TATTAGCGGT CCTGAACAAA CAAACACCGA AACAGCAAGT
GCATACGGCA ACCTCGGAAT CCTTTTTCAG ACAAGAGGAG AGCTTGACCG CGCTGAGGAG
ATGTACCTGA AAGCATTGAC CATCAATGAG TCCCTTGACC ACAAAGAAGG TATGGCAAGT
GACTACGGTA ACCTCGGAAA CCTTTACAAG ACAAAAGGAG AGCTTGACTG CGCTGAGGAG
ATATACCTGA AAGCATTGGC CATCAATAAG GCCCTTGACA GCAAAGAGGG TATGGCAAGT
GACTACGGCA ACCTCGGAAT CCTTTTTCAG ACAAGAGGAG AGCTTGACCG CGCTGAGGAG
ATGTACTTGA AAGCATTGAC CATCAATGAG GCCCTTGACC GCAAAGAGGG TATGGCAAGT
GACTATGGTA ACCTCGGTAA CCTCTTTCAG ACAAGAGGAG AGCTTGACCG CGCTGAGGAG
ATGTACCTGA AAGCATTGAC CATCAATGAG GCCCTTGGCC GCAAAGAGGG TATTGCAAAT
GAGTACGGCA TCTATAAAAC AAGAGAAGAG CGTGACCTCG CTGAGTCGAT TTTGCTATTT
TCTTCCGCAA GTCTAACGAC TCGAGAAGTG GTAAGAGTAC TTAACAAGTT TAGCTACATC
TCTACCCGTT TATCTTTAGA TTCGAAAAAA AAAGCTCTTG CAACCGCTTT TGTTGATCTT
CAGGGATATG GTATCGAAAA GTTTTCACGA ATATTTTTCG AGTCTGGAAG TACTATTACA
TGTTTAGCGC AAAATCTTGC AAGAATACTC CAGAGACGCG GTAACAATTT ACAAGGTTCA
AAACCAATCG ATATATTAAC GAACAACAAA CACGCCTATC TATATCTTTG GCTCTGTTCG
GGAGTAATGT GTTATCCAGT TCCCGAAGGT CCACCGGACC ATATCCAAGA AGGGATGTAT
GGCCCTATAG CTAACATATA TAGTAGACCC CCTTATTATG ATCGCCCGCC TCTTGAAATT
TATGATACAA ACGGCGATAG GTTGATAAAA GAATTAGAAA AAGAAGTATT TCCCGATTTG
AGTACGGGAA AAATATCGCT TTTTCTTACT ACTGCATCTG GGCTTCAATT AACGGGTGAC
ATCGCAATTA ATGATTTTAT TGATCCTATG GGATATCCAC AGGCTACTCC AGATTTTATA
AACGAAAAAG TCAGAAAATG TAGAGGTTTT TATGTGCGTA GCTATCAGGA TATGCTATTT
AAGAGATGTT ACTACCGTAC TCATATGCCA ACGATTGTCT TTCTTTATGA TGAAAATATT
GACTGTTCAT TCAACGTAGG TAAATATCAC TTTCTATTCG ATGAAGGTTT GACTTGGAAT
GATATTGCTG CAAATTACCC CCTAAGTATT TGGATTGCTT GTGAGCAGGA AACTCATCAA
AATATCCTTA AGAAATGCAT AGATCATTTT GTTAATGGTG ATTGGTATTT TGTAATCTAT
GGAAAATATA ATTTATTTCC AATATTAATC GGTCATAATA AAAAATTTAG AGATATGTGT
AAAAGCATCG ATGTAAGTGT CATAGAATAA
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| Protein sequence | MKRKFSVFMA SPSDLANERR FFKDAIKQIN TGFGEGANVE FEPLCWEDTL ASTGRRSQGV
INKEIDKCDV FILAMYRRWG QDAPDAAPYT SYTEEEYHRA LSRWQTEGSP EIFVFFKRVD
AAVEGDPGVQ LKKVIDFRKS LENTRKILYH YFDDEAGFIL EVDRHLRAYA KGELPKADQQ
RDIVLLPLAV VEEVNKAKTY AEQKALEAEL AHEDAEKTHL RLELIQLQTA KDAAELSKEG
KIEYARQKFS ELITETEDIR ILSLGYEFFY RTGDFVSAFQ VLNKWLNISG PEQTNTETAS
AYGNLGILFQ TRGELDRAEE MYLKALTINE SLDHKEGMAS DYGNLGNLYK TKGELDCAEE
IYLKALAINK ALDSKEGMAS DYGNLGILFQ TRGELDRAEE MYLKALTINE ALDRKEGMAS
DYGNLGNLFQ TRGELDRAEE MYLKALTINE ALGRKEGIAN EYGIYKTREE RDLAESILLF
SSASLTTREV VRVLNKFSYI STRLSLDSKK KALATAFVDL QGYGIEKFSR IFFESGSTIT
CLAQNLARIL QRRGNNLQGS KPIDILTNNK HAYLYLWLCS GVMCYPVPEG PPDHIQEGMY
GPIANIYSRP PYYDRPPLEI YDTNGDRLIK ELEKEVFPDL STGKISLFLT TASGLQLTGD
IAINDFIDPM GYPQATPDFI NEKVRKCRGF YVRSYQDMLF KRCYYRTHMP TIVFLYDENI
DCSFNVGKYH FLFDEGLTWN DIAANYPLSI WIACEQETHQ NILKKCIDHF VNGDWYFVIY
GKYNLFPILI GHNKKFRDMC KSIDVSVIE
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