| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1388 |
|---|
| Symbol | |
|---|
| ID | 6463628 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | + |
|---|
| Start bp | 1451700 |
|---|
| End bp | 1452950 |
|---|
| Gene Length | 1251 bp |
|---|
| Protein Length | 416 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 642727627 |
|---|
| Product | protein of unknown function DUF214 |
|---|
| Protein accession | YP_002018268 |
|---|
| Protein GI | 194336474 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0100303 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACAG GTTTATGGAT TGCACAACGC TTCAGTTTTG CCCGAAAACG GTTTCGGGTC
ATCAATATCA TCTCAGCAAT CAGTCTTGCA GGAATCGTTA TTGGCGTAAG CACCCTCCTT
GTGGTCATGA GTGTGCTGAA CGGATTTCAG AAACTTGCAC GCGACCTTTT CATCACCATC
GACAGCCCAG CCCAACTGGT TCCCTTTGAG GGCAGAACCA TGAAGATCTC CGAAAATCTC
CTGCAATCGA TACGATCCAT TGAAGGCGTC GGATCGGCAG AGCCTTTTGC CGAAGGAGAG
GCCATTCTTG CTACCAGAGA AAAAAGCGAA CTGGTCGTTG TAAAAGGAAT CAGCGATGCG
GCTCAGCGCC GGTTGATGCG TCAGACCCAC ACATTGCGCC CCTTTTTTAC CCCTGAAACC
ATAGCTGTCG GGGAGCTTTT AGCTTTCAGA ACAAACCTTT ATCCCTTCAG AGAGGTCAAA
ATTTTCAGTC CGGAACTGAT CTCTCTTGGC CTTGAATCGC TCTCGGAGCC CTATCTTATA
CCGATGCTCG GTATTCCTGA AACCAGCGTC ACATCGCTTT TTTCCCTTCA GAAATTGTTT
GATGACCGCT ATGTTCTCAC CTCCGGCCTT TTCGCCCGGA AAATTCTGCT CATGGGCAGC
GAAGAGTACT CAGGCATTGA CATCAGGGGG AAAGAGGGCG TTTCAGGTGA TGCCTTCAGC
GAAAACCTCA GGAAGTGGCT GGCACAAAGT CCCCTGAAAA CAAGCCTTCG GGTGCGCACC
CTCGATGAAA AATACAGTAA CATCTTCGCC GTCATGCAAC TTGAAAAATG GGTGAGTTTC
AGCGTTCTGA TGCTCATTAT TCTTGTCGCT GCCCTCAGCC TTACTGGAGC CCTCGCCATG
ACCGCCATCG ACAAACAGCG TGAACTCTTC TATCTTCGCT GTCTCGGCAT GGAAAAACCG
CAGTTCATGG CCATCTTCAT CATCCAGGGA GGAATGACCG GAATTGCAGG CACTGCCGCC
GGAACCGTCA TTGCATGGAG CCTCTGCAAA CTCCAGGAGC TTTACGGCTT TGTGCAGCTT
CCCTCAAAAA GCGCCTTTAT CATCCAGGCC TACCCGGTCA ACATGCAAAC CGGCGATTTT
ATTGCCGTCA GCATCATGGC CATCCTGCTC TGTTTTCTGG TAAGCCTCTA TCCTGCCCGA
AAAGCAGCCC TGATTGCCAG AAGCCGCTCG CTCGATCTCA AGACAAACTG A
|
|---|
| Protein sequence | MKTGLWIAQR FSFARKRFRV INIISAISLA GIVIGVSTLL VVMSVLNGFQ KLARDLFITI
DSPAQLVPFE GRTMKISENL LQSIRSIEGV GSAEPFAEGE AILATREKSE LVVVKGISDA
AQRRLMRQTH TLRPFFTPET IAVGELLAFR TNLYPFREVK IFSPELISLG LESLSEPYLI
PMLGIPETSV TSLFSLQKLF DDRYVLTSGL FARKILLMGS EEYSGIDIRG KEGVSGDAFS
ENLRKWLAQS PLKTSLRVRT LDEKYSNIFA VMQLEKWVSF SVLMLIILVA ALSLTGALAM
TAIDKQRELF YLRCLGMEKP QFMAIFIIQG GMTGIAGTAA GTVIAWSLCK LQELYGFVQL
PSKSAFIIQA YPVNMQTGDF IAVSIMAILL CFLVSLYPAR KAALIARSRS LDLKTN
|
|---|
| |