| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1386 |
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| Symbol | |
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| ID | 6463630 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011060 |
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| Strand | + |
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| Start bp | 1449115 |
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| End bp | 1450416 |
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| Gene Length | 1302 bp |
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| Protein Length | 433 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 642727625 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_002018266 |
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| Protein GI | 194336472 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.904062 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATTGCCT GGCAGACCAT TAAAAAAATT TCTCCGCTAC AGGCAATTGT CTTTACCGGA
ACAATCAGTA TTTGTATTGT TATAGCTGGT ACTGCAGGTT TTTTTGTCAC ACAGCACACT
CTGCTTGAAA AGGTGGAAAA AAAACAGGCA TGTTATCTTG ATCTGGTTGA TTTCAGGGGT
AAACTCATTG AGTTTGGACT TTTGCGCAAT CAGGCAGAGC GGCTGAATGG CACAACAGAA
GAGCAGGCAA CCCAGGAAAG TGAGCATTTT GAAGTACTGC TTTTGATGTA TGAAAAACTG
CTCTCGGAGA TGCATGATGC CGGTTTACAG CCTGTTGCCT CGATGTTGCT CACCAGAGAG
AGTTGGCCGA AACTGCTTGC CGCATCAAAC CTTGAACTGT TAAGGCTTGA CCTTGAAAAA
AGTATTGAAA AAGCCAAAAT TGAATCACAG GATGCCTCAG TCAAACTTGT TGTCATCAAC
GAGTTTTTTC TGCTCTTTAT TCTTGCTGTA TTGCTCACAG TGAGTATCAC AGCAGGATGG
ATGCTCCACA ACAATTATCG CCAGACGCTG ATCCCCCTTT CCCAGCTTGC AGGGCAATTA
AAACTGCTCA ATAGAAATAT ACCGGAGAGT ATTCGGGATA CCGCTGAAGA GATGAAAAAG
GAGCTGACTG ATGCGGAGTA CTCCAGCGAC ATCACCCAGG TCACCCGCTC GATCATGAGC
TTTTGCGGTG ATATTGATGC GAAAAATAAA AAGCTTGATG AACTGCATAT TCGGGATGAA
AAAACCAATC TTTATAACTA TCGCCATTTC AAAGAGCATC TGATTGTAGA GGTCGAACGC
TCCAAACGCC AGAATGAAAA GGTCTCCCTT GCCATGATTG ATATTGATTA CTTCAAGCGA
TACAATGATG CCAATGGCCA TCTTGCTGGT GACAGGGCAC TGAAGGCGCT CGCCGATATT
ATCAGCACAC AGTGCAGGGC ATATGATGTT CCTTCAAGAT TCGGTGGCGA AGAGTTTGCG
ATCCTGTTTC CCAAAACAGA TACCGAGACA GCAAGTGAAA TAGCCGAACG TCTTCGCAAG
ATTATCAGCC GGGAATCATT TCGGCAGCAA CAACAGCAGC CTGCCGGAGA GCTGACGGTC
AGTATCGGTG TTGCAACGTT TCCGGCTGAT GCTGCTGACT GGCATAACCT GATCAACAAT
GCCGACAGGG CTCTCTACAA GGCAAAGTCA AACGGCAGAA ACAAAGTGGT AACCTTTCTT
TCCATGAATA GTCAAAAATC AGGAAAGCGG GATGAGGCCT GA
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| Protein sequence | MIAWQTIKKI SPLQAIVFTG TISICIVIAG TAGFFVTQHT LLEKVEKKQA CYLDLVDFRG
KLIEFGLLRN QAERLNGTTE EQATQESEHF EVLLLMYEKL LSEMHDAGLQ PVASMLLTRE
SWPKLLAASN LELLRLDLEK SIEKAKIESQ DASVKLVVIN EFFLLFILAV LLTVSITAGW
MLHNNYRQTL IPLSQLAGQL KLLNRNIPES IRDTAEEMKK ELTDAEYSSD ITQVTRSIMS
FCGDIDAKNK KLDELHIRDE KTNLYNYRHF KEHLIVEVER SKRQNEKVSL AMIDIDYFKR
YNDANGHLAG DRALKALADI ISTQCRAYDV PSRFGGEEFA ILFPKTDTET ASEIAERLRK
IISRESFRQQ QQQPAGELTV SIGVATFPAD AADWHNLINN ADRALYKAKS NGRNKVVTFL
SMNSQKSGKR DEA
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