| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1363 |
|---|
| Symbol | |
|---|
| ID | 6462066 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | + |
|---|
| Start bp | 1427510 |
|---|
| End bp | 1429576 |
|---|
| Gene Length | 2067 bp |
|---|
| Protein Length | 688 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 642727603 |
|---|
| Product | carboxyl-terminal protease |
|---|
| Protein accession | YP_002018244 |
|---|
| Protein GI | 194336450 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0793] Periplasmic protease |
|---|
| TIGRFAM ID | [TIGR00225] C-terminal peptidase (prc)
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTAGAA AAAAACTGCT TCTCATGATT GTGATATTGG GAAGTAATGT GCCGGTATTT
GCAATAAATG CAAAAAATTC CGTTCCTGCT GTGCCGGTTG TAACCCTCAA GCCTACAGCG
GCACAGGAGG AAGCTGGCAA ATATATCAGT CAATATCTTC TGCAGAACCA CTATAGAAAG
GTATCAGTCA ATGACTCTCT TTCCCGGCAG ATACTCAATC GCTATATCGA AAATCTTGAC
GGAAGCAAAA GTTATTTTGT TGCAAGTGAG GTAGAAAGCC TCCATCATGT TTATGGAAAC
CGTATTGATG ATGAATTTCT TTCCGGCAAG GCAAATGCGG GATTTGGGGT CTATAACTTT
TTTCTTAAAC GTGCTAAAGA AAAAATGCGG TATATGAGGG CTGTTGCGGA TACCGTGCAT
TTTAATTTTT CAATTCCGGA AACCCTTGAC CTTGATCGCA AGGCTGATCC ATGGCCTGCC
GACCGACGTC AGCTCTCCGA ACTATGGAAA AAAGAGCTGA AATATCAATG GTTCAATCTT
AAATATTCCG GAGAAAACAA CAAAACCATC AGGCAGACAC TTTCAAAGAG TTTCACAAAC
CGATTGAACC TTCTTAACCG TCAAAAGCCG GAAGATGCCT TTCAGGCTTA TACCTATGCC
TTGACCACAT CGTTCGATCC CCATACCAGT TATTTCTCTC CGGATGAGTA CGAAAACTTT
CAGATCGACA TGAGTCGATC CCTTGAGGGA ATTGGAGCCA AACTGCAGAC AGAGAGCGAG
TATACCGTTG TTAATGAGAT TATTGCGGGA GGCCCGGCTT TTAAGAGCAA TCTCCTGAAA
AAAGGGGATA AAATTATTGG TGTCGGGCAA GGGCGGAGTG GGAATATTAC TGATGTTTCC
GGTTGGAGAA TTAATGATGT CGTAAGGCTT ATCCGCGGGA AAAAAGGTAC CATCGTACGT
CTTAAAGTTT TCCCGGCAAA TCAGGGTGGA CGTGGGCCAG CAAAAATTGT ACTCCTCCAG
CGAGACAAGG TCGATTTGCT GGAACAGGCG GCAAAGAAAA GTATTATCCA ACTCAATGGA
GAGAAAATAG GGGTTATTAC CATACCCTCA TTTTACCTTG ATTTTGAAGG TCAGCAACAG
AATGCCGGTA ATTACAACAG CACAAGTCGT GATGTAACCC GTATTTTGAA TGAACTCAAG
AATGAAGGTG TCGAGGGTCT TGTGATAGAT CTTCGTGACA ACGGCGGCGG TTCGCTTGAA
GAGTCCGTGA ATGTTACGGG ACTTTTCATT CCAAATGGCC CTGTTGTGCA GATAAGTAAC
TCAACCGGCG GCAAAATGGT GCTCAGGGAT GAAGACCGCA GAGTTCTTTA CAGCGGCCCG
CTTGCTGTGT TGGTCAATCG TTACAGCGCA TCAGCTTCCG AAATTTTTGC TGCAGCCATA
CAGGATTATG GGCGTGGAGT TGTTATTGGA GAGAGAACGT TTGGGAAAGG AACGGTTCAA
AGCATCATAA AACTGACGAG GCCCTTCTCA TTTTTTGGAA AGCAGCCTGA TCTTGGTCAA
ATCAAGCTCA CTGTTGCCAA ATTTTACAGG ATATCCGGGG GCAGCACTCA GCATAAAGGG
GTTTTGCCCG ATATTATTAT GCCCTCCATG ATTGACACCG CTCTTGTAGG AGAGGATACC
TACAGCAGCA GTTTGCCCTG GAGTACTCTT TCACGATCGT TTTATCGTCC TACAGCAGAT
GTCAGCCCGG AAGAGATCAC TCTGCTTCGT CATAAGCAGC AGGAACGATC ATCAAAGAAC
CGTTTTTATC AGGCCTATCT GCATGACTTG AGTATCCTGA ACCAGATTCG CAAAAAAAAG
GCGGTCTCAC TTCAGGATTC TGCCTTTAAA TCGGAAACAG AGCGCATCAA GCTGATTGAA
GGATTGTGGA GTGCCGATAC TGATTCGACC AACGGCAAGA ACAGGGATGT GTTGCTCAAC
CAGTCGGCAG CAGTTGTTTC CGATATAATA GATCTGAAAG CAGCGCAAAG AGAGACGGTT
ACGCGGACGT TACCATCACT GAACTGA
|
|---|
| Protein sequence | MLRKKLLLMI VILGSNVPVF AINAKNSVPA VPVVTLKPTA AQEEAGKYIS QYLLQNHYRK
VSVNDSLSRQ ILNRYIENLD GSKSYFVASE VESLHHVYGN RIDDEFLSGK ANAGFGVYNF
FLKRAKEKMR YMRAVADTVH FNFSIPETLD LDRKADPWPA DRRQLSELWK KELKYQWFNL
KYSGENNKTI RQTLSKSFTN RLNLLNRQKP EDAFQAYTYA LTTSFDPHTS YFSPDEYENF
QIDMSRSLEG IGAKLQTESE YTVVNEIIAG GPAFKSNLLK KGDKIIGVGQ GRSGNITDVS
GWRINDVVRL IRGKKGTIVR LKVFPANQGG RGPAKIVLLQ RDKVDLLEQA AKKSIIQLNG
EKIGVITIPS FYLDFEGQQQ NAGNYNSTSR DVTRILNELK NEGVEGLVID LRDNGGGSLE
ESVNVTGLFI PNGPVVQISN STGGKMVLRD EDRRVLYSGP LAVLVNRYSA SASEIFAAAI
QDYGRGVVIG ERTFGKGTVQ SIIKLTRPFS FFGKQPDLGQ IKLTVAKFYR ISGGSTQHKG
VLPDIIMPSM IDTALVGEDT YSSSLPWSTL SRSFYRPTAD VSPEEITLLR HKQQERSSKN
RFYQAYLHDL SILNQIRKKK AVSLQDSAFK SETERIKLIE GLWSADTDST NGKNRDVLLN
QSAAVVSDII DLKAAQRETV TRTLPSLN
|
|---|
| |